Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 8.6e-153 543.9 331 100.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 8.7e-113 411.0 344 74.4
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 9.6e-112 407.5 350 73.4
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.8e-111 405.2 338 75.7
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 3.4e-109 399.1 353 66.3
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.9e-105 385.6 334 76.0
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 5.5e-99 365.2 314 75.8
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.5e-85 318.9 341 59.2
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 3.2e-83 312.8 364 52.2
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 7.2e-83 311.6 370 58.1
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 3.6e-82 309.3 370 58.1
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 7.9e-82 308.1 357 54.9
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 5.7e-80 302.0 352 59.1
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 2.8e-79 299.7 347 59.4
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 4.8e-79 298.9 367 59.1
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 6.3e-79 298.5 351 55.6
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 8.2e-79 298.1 349 53.9
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.6e-77 293.9 345 55.4
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 2.0e-77 293.5 347 56.8
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 4.5e-77 292.4 360 59.7
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-76 290.8 360 52.5
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.7e-76 290.4 361 55.1
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 5.5e-75 285.4 362 56.9
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 9.4e-75 284.6 354 53.4
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.1e-74 283.5 351 50.7
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 2.1e-74 283.5 351 52.4
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.7e-74 282.3 355 52.1
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.4e-73 280.8 346 56.4
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.8e-73 280.4 354 50.8
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.8e-73 280.4 359 51.3
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.0e-73 279.6 359 53.8
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 3.0e-73 279.6 332 54.8
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 3.0e-73 279.6 371 50.4
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.0e-73 279.3 359 50.4
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 4.0e-73 279.3 358 52.0
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 8.8e-73 278.1 352 52.6
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-72 277.3 354 51.4
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.5e-72 277.3 342 52.0
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.0e-72 276.9 354 50.8
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.6e-72 276.6 360 50.0
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.3e-72 276.2 360 50.0
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.4e-72 275.8 354 55.6
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 4.4e-72 275.8 354 47.5
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 9.7e-72 274.6 359 51.8
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.2e-71 273.5 359 49.9
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.2e-71 273.5 354 53.4
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.2e-71 273.5 354 55.4
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 6.3e-71 271.9 377 48.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 8.2e-71 271.6 343 58.0
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.8e-70 270.4 355 54.1
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 4.1e-70 269.2 362 48.9
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 9.1e-70 268.1 373 48.0
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 5.9e-69 265.4 357 49.6
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.7e-68 263.8 366 52.7
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.7e-68 263.8 356 52.8
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.2e-68 263.5 367 49.6
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.2e-67 259.2 340 49.7
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 4.2e-67 259.2 361 49.6
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.5e-67 258.8 360 53.6
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 9.4e-67 258.1 359 50.1
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-66 257.7 347 55.0
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.2e-66 257.7 305 53.4
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.6e-66 257.3 336 54.5
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.6e-66 256.1 342 53.2
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 4.7e-66 255.8 334 49.1
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 6.1e-66 255.4 360 51.1
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 8.0e-66 255.0 345 47.0
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.4e-65 254.2 348 52.0
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 4.0e-65 252.7 340 53.2
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 4.0e-65 252.7 340 53.2
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 4.0e-65 252.7 340 53.2
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 4.0e-65 252.7 373 46.9
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 5.2e-65 252.3 344 55.8
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.4e-64 249.6 350 57.1
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.4e-64 249.2 351 51.3
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 7.5e-64 248.4 368 47.6
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 4.8e-63 245.7 334 53.9
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 6.3e-63 245.4 341 54.3
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 5.4e-62 242.3 342 53.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.7e-61 240.0 344 42.4
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 3.5e-61 239.6 367 51.0
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.3e-60 237.7 327 50.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.3e-60 237.7 368 48.9
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.7e-60 237.3 343 52.8
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-60 236.5 336 47.6
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.9e-60 236.5 367 49.9
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.8e-60 236.1 268 49.3
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 5.0e-60 235.7 356 50.0
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.5e-59 234.2 358 51.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.9e-59 233.8 331 51.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.4e-57 227.6 360 41.9
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 5.2e-57 225.7 345 54.8
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.0e-56 223.8 336 46.7
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.2e-55 220.3 327 45.3
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 6.3e-55 218.8 357 52.4
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.1e-54 218.0 330 49.1
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-54 217.6 340 50.0
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-54 216.9 342 50.6
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.1e-54 216.1 237 61.6
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 5.4e-54 215.7 340 53.8
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.2e-53 214.5 297 52.5
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 7.7e-53 211.8 336 50.6
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-52 211.1 338 50.6
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.3e-52 210.3 351 52.4
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 2.3e-52 210.3 344 47.4
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 3.8e-52 209.5 338 50.3
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.8e-52 209.5 362 50.3
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.8e-52 209.5 343 45.8
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 6.6e-52 208.8 340 49.4
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 8.6e-52 208.4 355 51.3
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 8.6e-52 208.4 338 50.3
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 8.6e-52 208.4 340 49.4
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.9e-51 207.2 337 49.0
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-51 206.5 335 44.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 9.5e-51 204.9 335 44.8
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.2e-50 204.5 340 47.9
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 2.8e-50 203.4 370 51.1
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 3.6e-50 203.0 348 48.9
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 6.1e-50 202.2 337 50.7
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.0e-49 201.4 350 40.0
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.8e-49 200.7 342 43.0
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.2e-48 198.0 353 51.8
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-48 197.2 369 49.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 4.4e-48 196.1 293 55.3
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 4.4e-48 196.1 334 43.4
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 4.4e-48 196.1 334 43.4
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 4.4e-48 196.1 334 43.4
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 3.7e-47 193.0 333 43.2
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 4.9e-47 192.6 341 46.6
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 8.3e-47 191.8 335 44.8
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.3e-47 191.8 340 50.3
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.8e-46 190.7 348 41.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 7.0e-46 188.7 285 48.4
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-45 187.2 373 48.8
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-45 187.2 373 48.8
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 2.0e-45 187.2 373 48.8
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.7e-45 186.8 348 37.6
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 7.8e-45 185.3 340 43.2
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.9e-44 183.0 348 35.1
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 6.6e-44 182.2 329 39.2
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 9.5e-43 178.3 347 41.5
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.3e-39 167.9 237 50.6
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.7e-39 167.5 340 44.4
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.7e-39 167.5 257 40.5
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.9e-38 164.1 323 38.7
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 3.2e-38 163.3 323 38.4
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 6.6e-36 155.6 174 48.3
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 7.3e-35 152.1 394 32.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 9.5e-35 151.8 323 43.3
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 1.6e-34 151.0 375 34.7
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 6.2e-34 149.1 309 42.4
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.4e-33 147.9 340 33.8
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 5.2e-33 146.0 340 35.6
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 6.8e-33 145.6 323 33.4
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 3.4e-32 143.3 351 36.8
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 4.4e-32 142.9 415 33.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 7.5e-32 142.1 324 38.3
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 6.4e-31 139.0 323 32.5
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 6.4e-31 139.0 355 32.1
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.1e-30 138.3 340 32.4
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.9e-28 129.8 331 39.0
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.4e-25 121.3 260 35.0
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 8.9e-25 118.6 164 44.5
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.4e-24 116.3 354 45.2
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 2.9e-23 113.6 339 42.5
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.1e-21 107.5 341 40.8
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 2.1e-18 97.4 94 56.4
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 8.1e-18 95.5 193 39.9
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.0e-08 64.3 174 31.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.8e-08 62.8 236 26.3
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-07 61.6 94 38.3
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 8.4e-07 58.9 169 38.5
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 1.4e-06 58.2 121 44.6
ATR0153G003 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.2e-06 56.6 62 48.4


User provided reference genes

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