Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 3.1e-184 648.3 312 100.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.9e-165 585.9 313 90.4
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 4.1e-165 584.7 313 90.4
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 9.0e-152 540.4 296 88.2
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.4e-149 533.1 295 87.5
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.1e-128 462.2 236 93.2
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.3e-123 446.8 315 71.1
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 5.9e-119 431.4 233 89.3
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.3e-118 430.3 297 69.4
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 2.2e-118 429.5 293 70.0
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 2.9e-118 429.1 310 67.1
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 5.0e-118 428.3 314 67.5
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.1e-117 427.2 322 67.4
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.4e-117 426.8 309 70.6
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 2.5e-117 426.0 309 65.7
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.5e-117 426.0 310 68.7
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 2.5e-117 426.0 309 66.0
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 4.2e-117 425.2 294 71.1
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.8e-115 419.9 311 65.9
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 2.3e-115 419.5 313 65.8
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 2.3e-115 419.5 303 69.3
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 6.7e-115 417.9 309 65.0
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 8.8e-115 417.5 310 66.5
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.1e-114 417.2 298 69.8
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.1e-114 417.2 295 68.8
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.6e-114 416.0 309 64.7
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 4.4e-114 415.2 294 68.4
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 7.4e-114 414.5 260 75.0
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.7e-113 413.3 309 64.7
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 6.3e-113 411.4 260 73.8
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 8.2e-113 411.0 313 64.9
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 8.2e-113 411.0 269 71.7
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 8.2e-113 411.0 308 64.0
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 1.8e-112 409.8 256 73.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.4e-112 409.5 313 62.9
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 3.1e-112 409.1 257 72.4
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 3.1e-112 409.1 252 75.0
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 4.1e-112 408.7 307 66.8
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 6.9e-112 407.9 291 66.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.5e-111 406.8 253 75.1
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 3.4e-111 405.6 309 64.4
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.0e-110 404.1 295 66.1
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.7e-110 403.3 262 71.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.9e-110 402.5 240 77.1
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 6.5e-110 401.4 311 64.3
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 6.5e-110 401.4 254 73.6
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.9e-109 399.8 248 74.2
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 2.5e-109 399.4 315 67.6
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.2e-109 399.1 247 73.3
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.2e-109 399.1 259 71.0
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 3.2e-109 399.1 309 64.4
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.6e-108 396.7 230 79.6
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.6e-108 396.7 230 79.6
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.6e-108 396.7 256 72.3
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.6e-108 396.7 256 71.9
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 6.1e-108 394.8 255 71.4
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 6.1e-108 394.8 245 73.1
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 6.1e-108 394.8 245 73.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.1e-106 390.6 256 71.9
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.0e-106 389.8 298 65.1
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 2.6e-106 389.4 255 71.4
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 5.7e-106 388.3 312 62.2
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.3e-105 387.1 248 72.6
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.7e-105 386.7 311 63.7
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 2.2e-105 386.3 246 71.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.7e-105 385.6 273 67.4
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.3e-105 384.8 256 70.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 8.2e-105 384.4 230 77.0
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 8.2e-105 384.4 273 68.5
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.8e-104 383.3 256 69.1
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 7.0e-104 381.3 295 62.7
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 2.0e-103 379.8 310 63.5
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-102 377.5 331 59.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-102 377.5 331 59.8
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 2.5e-101 372.9 312 60.3
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.2e-100 370.5 279 62.4
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.6e-100 370.2 262 66.4
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 5.2e-99 365.2 257 67.3
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 8.8e-99 364.4 257 67.3
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 7.5e-98 361.3 230 71.7
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.8e-97 358.6 308 60.4
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.7e-95 352.8 289 62.3
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 6.5e-94 348.2 207 76.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 8.5e-94 347.8 239 67.4
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 5.5e-93 345.1 207 75.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 4.7e-92 342.0 226 70.4
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 8.0e-92 341.3 247 64.4
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 6.8e-91 338.2 248 63.7
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.4e-90 335.5 246 64.2
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 4.7e-84 315.5 312 54.8
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 6.1e-84 315.1 247 62.8
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.6e-82 309.7 245 59.2
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 2.5e-77 293.1 269 56.1
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.3e-77 292.7 242 57.0
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 4.7e-76 288.9 215 63.7
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.0e-75 287.7 261 57.9
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 4.0e-75 285.8 200 69.5
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 9.8e-74 281.2 245 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 5.6e-69 265.4 209 57.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 5.2e-67 258.8 172 64.5
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.2e-66 257.7 151 75.5
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 5.0e-62 242.3 177 66.1
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 7.5e-58 228.4 172 61.6
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.2e-52 211.1 287 39.4
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.0e-46 191.4 244 41.4
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 4.4e-42 176.0 208 45.7
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.3e-41 174.5 153 52.9
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.2e-41 173.7 170 60.6
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.0e-38 164.9 128 61.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 3.5e-31 139.8 162 45.7
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.6e-31 139.4 99 66.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 6.7e-30 135.6 90 70.0
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 5.6e-29 132.5 92 69.6
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.8e-28 130.2 98 63.3
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.4e-27 127.9 177 39.5
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.2e-26 124.8 150 42.0
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-24 118.2 119 52.9
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.4e-24 117.1 119 52.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.1e-21 108.2 63 76.2
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-19 101.7 136 39.7
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-19 101.3 143 39.9
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 9.0e-19 98.6 57 84.2
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 4.6e-15 86.3 202 30.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-12 77.8 116 41.4
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-11 75.1 59 55.9
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 7.6e-10 68.9 94 40.4
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.7e-09 67.8 121 31.4
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 6.5e-09 65.9 117 34.2
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 6.5e-09 65.9 161 32.9
ECA246G0314 Erigeron canadensis HOM05D001287 ORTHO05D001226 1.9e-08 64.3 222 26.6
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.9e-08 64.3 41 68.3
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-07 61.2 75 38.7
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 2.7e-07 60.5 50 58.0
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 2.7e-07 60.5 213 24.9
RcHm_v2.0_Chr2g0173421 Rosa chinensis HOM05D001287 ORTHO05D001226 3.0e-06 57.0 202 26.7
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 6.7e-06 55.8 50 54.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.7e-06 55.8 49 51.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 8.7e-06 55.5 50 54.0


User provided reference genes

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