Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 2.1e-182 642.1 305 100.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 4.5e-172 607.8 306 93.8
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.3e-168 595.5 308 92.2
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.6e-161 571.6 298 90.6
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.1e-157 558.5 308 84.7
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 4.1e-157 558.1 308 83.8
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.0e-156 555.8 296 85.8
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.0e-156 555.8 308 83.8
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.6e-156 555.4 296 85.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 3.4e-156 555.1 296 86.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.4e-156 555.1 296 85.1
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.4e-156 555.1 308 84.1
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 7.7e-156 553.9 309 83.8
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 7.7e-156 553.9 309 84.5
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.7e-156 553.9 295 85.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.9e-155 552.0 308 83.1
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.8e-155 551.6 296 85.5
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 5.0e-155 551.2 296 85.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 5.0e-155 551.2 296 85.8
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.5e-155 550.8 295 86.1
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.9e-154 549.3 308 82.8
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.2e-154 548.5 303 82.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.2e-154 548.5 308 82.1
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 4.2e-154 548.1 309 82.2
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 9.4e-154 547.0 296 83.8
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.2e-153 546.6 308 82.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.6e-153 546.2 304 82.6
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.1e-153 545.8 308 81.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.7e-153 545.4 296 83.8
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 3.6e-153 545.0 297 82.8
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 4.6e-153 544.7 308 81.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 6.1e-153 544.3 309 81.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 6.1e-153 544.3 308 82.1
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.0e-152 543.5 296 83.4
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.0e-152 543.5 324 83.0
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.4e-152 543.1 296 83.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.4e-152 543.1 420 66.7
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.1e-151 540.0 308 79.9
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.5e-151 539.7 302 81.1
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.6e-151 538.9 296 83.4
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 2.6e-151 538.9 296 82.8
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.6e-151 538.9 294 85.0
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 4.3e-151 538.1 296 83.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 4.3e-151 538.1 296 82.8
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 5.7e-151 537.7 301 81.4
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 9.7e-151 537.0 309 79.3
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.3e-150 536.6 296 82.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.7e-150 536.2 308 80.8
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 3.7e-150 535.0 296 82.8
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 6.3e-150 534.3 308 79.9
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.4e-149 533.1 320 78.4
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.3e-149 531.2 305 80.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 9.1e-149 530.4 303 79.2
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.2e-148 530.0 326 76.1
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.0e-148 529.3 303 79.2
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.6e-148 528.9 304 80.3
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 4.5e-148 528.1 296 81.1
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.3e-147 526.6 298 81.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 6.5e-147 524.2 308 77.6
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 8.5e-147 523.9 296 79.4
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 8.5e-147 523.9 297 80.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.5e-147 523.9 308 78.9
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 8.5e-147 523.9 309 75.4
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-146 523.1 296 79.7
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.9e-146 522.7 296 79.7
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.5e-146 522.3 308 76.0
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.5e-146 522.3 297 80.8
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 3.2e-146 521.9 296 80.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 4.2e-146 521.5 296 79.1
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.2e-146 520.8 295 81.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-145 519.6 296 78.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.6e-145 519.6 309 75.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 2.1e-145 519.2 296 80.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.7e-145 518.1 295 78.6
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.0e-144 516.9 296 77.4
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.0e-144 516.9 317 75.7
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.0e-144 516.9 305 76.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.8e-144 516.2 310 74.2
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 6.7e-144 514.2 308 75.0
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 6.7e-144 514.2 296 78.4
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.5e-143 513.1 296 77.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.6e-143 512.3 296 78.7
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.3e-143 511.9 296 78.4
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.3e-143 511.9 297 79.1
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 7.4e-143 510.8 296 78.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.7e-143 510.4 306 74.5
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.7e-142 509.6 305 74.8
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.8e-142 508.1 296 78.0
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 8.2e-142 507.3 296 77.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.1e-141 506.9 308 73.7
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-141 506.5 297 78.1
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 2.4e-141 505.8 294 79.3
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 4.1e-141 505.0 295 78.6
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 5.3e-141 504.6 298 78.2
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.5e-140 501.9 297 78.1
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 3.5e-140 501.9 293 78.5
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 7.7e-140 500.7 297 78.1
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.0e-139 500.4 307 78.2
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.3e-139 500.0 295 77.3
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-139 499.2 297 77.8
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-139 499.2 297 77.8
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.9e-138 496.1 298 77.5
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 2.5e-138 495.7 297 77.4
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.6e-137 493.0 291 75.3
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.0e-136 488.8 294 76.2
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.7e-134 481.9 302 75.5
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.7e-132 475.7 269 82.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.0e-131 471.5 325 69.2
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.3e-128 462.6 269 79.2
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.3e-126 456.8 277 76.5
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.5e-122 443.4 270 74.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 9.5e-122 440.7 268 76.5
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.8e-120 436.4 280 70.7
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 7.5e-119 431.0 224 90.2
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.2e-118 429.5 284 68.0
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.3e-115 420.2 286 67.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.7e-110 402.1 297 67.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.6e-108 396.7 285 66.3
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.5e-108 395.6 244 74.6
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 7.8e-108 394.4 268 72.0
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 6.2e-105 384.8 285 64.2
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 3.3e-98 362.5 292 58.9
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.2e-94 349.7 294 56.5
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.9e-94 348.6 229 67.7
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 9.2e-93 344.4 186 81.7
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.9e-90 336.7 196 77.0
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.9e-85 320.1 258 63.6
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.9e-85 320.1 288 56.2
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.9e-77 293.5 168 81.5
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 3.1e-72 276.2 147 82.3
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 5.1e-67 258.8 229 54.1
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 7.9e-60 235.0 127 85.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 5.6e-58 228.8 131 74.8
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-55 220.3 269 46.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-49 200.7 146 65.1
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-43 181.0 146 61.0
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.9e-43 179.5 100 77.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-41 173.7 146 60.3
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.4e-39 166.4 95 72.6
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.5e-37 160.2 110 64.5
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-36 157.1 146 53.4
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 9.4e-29 131.7 72 84.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.6e-20 103.2 57 77.2
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.4e-19 101.3 64 75.0
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 3.3e-18 96.7 57 71.9
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 8.2e-17 92.0 65 64.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 8.2e-17 92.0 65 64.6
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 3.8e-14 83.2 44 75.0
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 8.5e-14 82.0 44 75.0
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-13 81.3 43 76.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.2e-12 78.2 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.0e-11 73.6 35 82.9
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.2e-10 71.6 61 59.0
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.2e-09 67.4 40 80.0
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 3.5e-07 60.1 116 31.0


User provided reference genes

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