Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 9.9e-166 586.6 282 100.0
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 2.3e-138 495.7 273 86.4
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 3.0e-138 495.4 273 86.1
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 6.0e-131 471.1 282 80.1
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 8.4e-125 450.7 267 81.3
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 1.3e-117 426.8 268 74.3
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 2.5e-116 422.5 274 70.8
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 5.5e-116 421.4 223 88.3
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 2.7e-115 419.1 275 70.2
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.1e-113 413.7 246 76.8
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 1.1e-113 413.7 260 71.5
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.5e-113 413.3 269 71.4
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 5.7e-113 411.4 262 68.3
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 5.7e-113 411.4 263 72.6
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 9.7e-113 410.6 266 70.3
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.7e-112 409.8 265 70.6
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 8.2e-112 407.5 269 70.6
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 3.1e-111 405.6 282 66.7
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 5.3e-111 404.8 265 67.9
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 6.9e-111 404.4 265 70.6
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 2.6e-110 402.5 263 69.6
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 4.5e-110 401.7 260 70.0
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 5.9e-110 401.4 260 71.2
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 5.9e-110 401.4 272 67.3
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 2.2e-109 399.4 263 68.4
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 8.5e-109 397.5 275 66.2
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.9e-108 396.4 287 65.2
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 4.2e-108 395.2 269 68.4
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 5.5e-108 394.8 263 70.3
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 1.6e-107 393.3 269 68.4
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 2.1e-107 392.9 266 66.5
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 2.1e-107 392.9 266 66.5
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 3.6e-107 392.1 269 66.9
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 3.6e-107 392.1 269 66.9
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 1.0e-106 390.6 253 69.2
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.0e-106 390.6 269 66.2
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.4e-106 390.2 269 66.9
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 3.0e-106 389.0 268 70.1
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 3.9e-106 388.7 265 65.7
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 3.9e-106 388.7 282 65.6
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 6.7e-106 387.9 273 67.0
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.1e-105 387.1 272 66.9
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 2.0e-105 386.3 264 66.7
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 5.7e-105 384.8 267 66.3
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 9.7e-105 384.0 284 63.4
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 9.7e-105 384.0 263 65.8
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.3e-104 383.6 269 65.8
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 2.2e-104 382.9 263 66.2
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 2.2e-104 382.9 284 63.0
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.2e-104 382.9 271 65.7
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 2.8e-104 382.5 259 67.2
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 8.2e-104 380.9 263 65.0
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.4e-103 380.2 268 63.1
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 4.1e-103 378.6 274 63.5
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 9.1e-103 377.5 261 64.0
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.2e-102 377.1 268 65.7
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 2.0e-102 376.3 276 62.0
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 3.5e-102 375.6 269 66.9
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 5.9e-102 374.8 284 62.7
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.7e-101 373.2 285 61.4
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 3.8e-101 372.1 259 66.4
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 2.5e-100 369.4 283 64.0
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 5.5e-100 368.2 268 63.4
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 7.2e-100 367.9 268 63.4
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 9.4e-100 367.5 272 62.9
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.2e-99 367.1 272 62.9
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 3.0e-98 362.5 275 61.8
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 6.7e-98 361.3 264 63.3
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 1.5e-97 360.1 282 59.6
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 2.4e-95 352.8 269 61.0
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 1.5e-92 343.6 255 61.6
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.6e-91 339.0 254 62.2
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 4.7e-91 338.6 248 64.5
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 8.8e-90 334.3 301 56.8
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 1.5e-89 333.6 245 64.1
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.7e-88 330.1 232 66.4
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 5.9e-86 321.6 236 60.6
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 1.9e-84 316.6 237 62.4
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 9.4e-84 314.3 241 61.4
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 2.1e-83 313.2 230 62.6
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 1.0e-82 310.8 195 72.8
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 7.5e-81 304.7 252 55.6
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 2.2e-80 303.1 252 55.2
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 2.4e-79 299.7 271 58.3
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 4.1e-79 298.9 194 69.6
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 7.2e-76 288.1 231 57.6
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.2e-73 280.8 184 70.7
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 1.4e-71 273.9 237 48.9
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 2.4e-71 273.1 176 71.0
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 2.0e-70 270.0 236 50.4
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 2.3e-69 266.5 237 49.4
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 1.1e-63 247.7 170 68.8
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 3.5e-62 242.7 185 57.8
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 8.6e-61 238.0 135 75.6
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 3.6e-51 206.1 151 65.6
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 8.1e-51 204.9 131 73.3
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 8.1e-51 204.9 131 73.3
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.3e-48 197.6 159 57.9
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 2.4e-47 193.4 145 61.4
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.1e-46 190.3 139 64.7
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 3.9e-45 186.0 148 60.1
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.3e-44 183.0 129 64.3
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 6.8e-42 175.3 108 68.5
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.6e-38 164.1 152 55.3
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 4.4e-33 146.0 239 32.2
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 1.0e-29 134.8 256 37.1
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 1.0e-29 134.8 109 63.3
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 1.0e-29 134.8 104 60.6
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 1.2e-22 111.3 95 53.7
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 1.8e-21 107.5 62 72.6
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 3.0e-21 106.7 162 40.1
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 1.8e-18 97.4 68 63.2
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.2e-17 94.7 50 86.0
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.2e-15 86.7 43 86.0
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.2e-15 86.7 43 86.0
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 1.1e-12 78.2 146 30.8
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.4e-10 71.2 38 86.8
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.4e-10 71.2 38 86.8
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 6.9e-10 68.9 55 60.0
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.4e-09 66.6 97 40.2
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 3.4e-09 66.6 43 72.1
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-08 64.3 73 45.2
MCO13G376 Micromonas commoda HOM05D006283 ORTHO05D007727 5.0e-08 62.8 165 25.5
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 1.9e-07 60.8 45 62.2
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 1.9e-07 60.8 45 62.2
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 7.2e-07 58.9 52 50.0
HanXRQChr12g0365531 Helianthus annuus HOM05D006283 ORTHO05D007727 3.5e-06 56.6 83 42.2


User provided reference genes

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