Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 2.4e-136 488.8 243 100.0
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 2.6e-98 362.5 251 74.5
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 2.2e-97 359.4 251 73.7
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.9e-97 359.0 251 73.7
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 6.2e-76 288.1 236 63.1
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 7.1e-72 274.6 226 62.4
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 7.9e-71 271.2 256 56.2
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 5.1e-70 268.5 254 55.9
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 1.3e-68 263.8 252 56.0
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 6.9e-67 258.1 246 56.5
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 6.5e-65 251.5 250 56.0
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 4.3e-61 238.8 249 54.2
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 8.2e-60 234.6 284 47.2
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 1.6e-55 220.3 280 45.4
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 5.1e-54 215.3 249 50.2
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 1.1e-51 207.6 271 46.1
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 7.0e-51 204.9 272 44.9
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 2.9e-49 199.5 255 45.9
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 1.6e-42 177.2 257 39.7
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 1.5e-37 160.6 255 39.2
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 3.7e-36 156.0 238 39.9
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 4.1e-35 152.5 240 39.2
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 4.1e-35 152.5 237 38.8
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 4.1e-35 152.5 252 40.1
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 1.2e-34 151.0 249 43.8
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 2.2e-33 146.7 241 39.0
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 8.5e-33 144.8 244 40.2
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 8.5e-33 144.8 241 39.0
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.1e-32 144.4 267 37.8
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 1.5e-32 144.1 243 37.4
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 2.1e-31 140.2 237 36.7
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 4.7e-31 139.0 246 33.7
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 6.1e-31 138.7 242 39.3
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 1.0e-30 137.9 241 37.3
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 1.8e-30 137.1 261 38.7
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.8e-30 137.1 237 34.2
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.0e-30 136.0 237 34.2
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 4.0e-30 136.0 240 37.1
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 6.8e-30 135.2 237 33.8
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 1.5e-29 134.0 250 35.6
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.5e-29 134.0 246 33.3
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 2.0e-29 133.7 138 48.6
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 3.4e-29 132.9 255 34.1
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 3.4e-29 132.9 241 35.7
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 4.4e-29 132.5 241 37.8
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 5.7e-29 132.1 239 35.1
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.3e-28 131.0 246 32.9
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 1.3e-28 131.0 244 35.2
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 2.2e-28 130.2 242 34.3
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 2.2e-28 130.2 259 34.0
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 2.2e-28 130.2 246 34.6
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 8.3e-28 128.3 262 34.7
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.1e-27 127.9 249 35.3
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 1.1e-27 127.9 248 35.9
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 3.1e-27 126.3 249 35.3
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 7.0e-27 125.2 251 34.3
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 1.6e-26 124.0 245 36.3
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 2.7e-26 123.2 238 36.1
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 4.5e-26 122.5 236 33.5
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 7.7e-26 121.7 165 43.0
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 1.7e-25 120.6 246 35.8
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 5.0e-25 119.0 255 32.9
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 6.6e-25 118.6 252 33.7
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 4.2e-24 115.9 261 31.4
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 5.2e-22 109.0 226 34.5
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 6.8e-22 108.6 257 30.7
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 1.2e-21 107.8 256 30.5
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 1.5e-21 107.5 250 30.8
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 2.6e-21 106.7 98 51.0
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 2.6e-21 106.7 256 29.7
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 3.4e-21 106.3 241 32.0
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 7.5e-21 105.1 246 30.5
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 9.8e-21 104.8 245 29.4
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 9.8e-21 104.8 254 29.1
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 1.3e-20 104.4 126 45.2
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.3e-20 104.4 254 30.7
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 1.7e-20 104.0 242 31.8
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.8e-20 103.2 149 41.6
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 8.3e-20 101.7 245 31.4
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 2.4e-19 100.1 242 33.9
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 2.4e-19 100.1 235 30.2
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 4.1e-19 99.4 243 29.6
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 1.0e-17 94.7 250 29.2
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 6.6e-17 92.0 158 39.2
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 1.5e-16 90.9 247 26.7
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 1.9e-16 90.5 266 28.2
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 2.5e-16 90.1 238 27.7
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 5.6e-16 89.0 268 27.6
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 4.7e-15 85.9 241 26.6
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 6.1e-15 85.5 255 29.0
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 8.0e-15 85.1 258 30.2
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 1.0e-14 84.7 245 27.3
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 6.8e-14 82.0 238 29.8
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 2.6e-13 80.1 260 29.2
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 4.4e-13 79.3 244 30.7
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 7.5e-13 78.6 234 27.8
SMO119G0030 Selaginella moellendorffii HOM05D017347 ORTHO05D008131 9.8e-13 78.2 103 37.9
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 4.9e-12 75.9 252 29.4
CBR_g27764 Chara braunii HOM05D017347 ORTHO05D008131 6.4e-12 75.5 115 36.5
Zm00001eb434190 Zea mays HOM05D007097 ORTHO05D008131 8.3e-12 75.1 253 27.7
SEGI_34425 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 1.1e-11 74.7 114 34.2
Mapoly0048s0108 Marchantia polymorpha HOM05D017347 ORTHO05D008131 2.4e-11 73.6 114 37.7
Pp3c10_10040 Physcomitrium patens HOM05D017347 ORTHO05D008131 2.4e-11 73.6 103 37.9
Actinidia03892 Actinidia chinensis HOM05D007097 ORTHO05D008131 5.4e-11 72.4 116 39.7
SEGI_18590 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 1.2e-10 71.2 99 33.3
Sc20g0006720 Simmondsia chinensis HOM05D007097 ORTHO05D008131 7.8e-10 68.6 232 25.9
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.0e-09 66.6 51 51.0
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 3.9e-09 66.2 102 40.2
Oeu006273.1 Olea europaea HOM05D007097 ORTHO05D008131 4.3e-08 62.8 111 36.9
Nn3g18010 Nelumbo nucifera HOM05D007097 ORTHO05D008131 5.2e-06 55.8 71 40.8


User provided reference genes

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