Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 5.1e-169 597.8 335 100.0
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 2.0e-157 559.3 335 91.9
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.3e-151 540.0 333 91.0
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 5.2e-121 438.3 337 73.0
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 5.7e-120 434.9 305 73.1
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 3.7e-119 432.2 326 70.2
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.4e-118 430.3 326 69.3
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 1.8e-118 429.9 332 65.1
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 1.8e-118 429.9 299 76.9
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 2.4e-118 429.5 296 69.9
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.2e-117 427.2 263 79.8
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 2.0e-117 426.4 302 75.8
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 5.9e-117 424.9 331 71.0
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 1.7e-116 423.3 266 93.2
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 6.5e-116 421.4 261 75.9
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 6.5e-116 421.4 326 66.9
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 3.2e-115 419.1 334 67.7
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 1.8e-113 413.3 304 67.4
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 3.0e-113 412.5 322 73.6
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 4.0e-113 412.1 330 69.7
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 7.5e-112 407.9 257 78.2
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 9.7e-112 407.5 328 69.5
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.1e-110 404.1 261 72.8
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-110 404.1 261 72.8
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.4e-110 402.9 333 67.0
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.1e-110 402.5 330 69.1
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 5.3e-110 401.7 260 74.6
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 7.0e-110 401.4 329 69.6
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 1.2e-109 400.6 332 72.3
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.6e-109 400.2 258 74.4
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 4.7e-106 388.7 257 70.0
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.4e-105 387.1 258 69.8
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 6.8e-105 384.8 303 64.4
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 2.6e-104 382.9 259 71.4
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 3.4e-104 382.5 300 68.0
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 3.4e-104 382.5 248 71.4
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.8e-102 376.7 343 63.3
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.0e-101 373.2 238 73.1
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 7.7e-101 371.3 303 73.6
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 1.7e-100 370.2 306 62.7
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.2e-99 365.9 258 69.8
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 9.5e-99 364.4 242 74.8
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 3.6e-98 362.5 257 64.2
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 4.7e-98 362.1 242 73.6
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 6.1e-98 361.7 301 66.8
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.0e-97 360.9 293 64.8
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 4.0e-97 359.0 302 66.6
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 2.6e-96 356.3 233 70.8
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.3e-95 354.0 288 70.5
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 1.7e-95 353.6 307 54.1
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 4.9e-95 352.1 340 68.2
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 6.3e-95 351.7 240 69.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 8.3e-95 351.3 325 66.2
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 8.3e-95 351.3 242 67.8
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.4e-94 350.5 260 61.9
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 3.1e-94 349.4 318 59.1
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 3.1e-94 349.4 240 68.3
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 9.2e-94 347.8 317 66.6
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 1.2e-93 347.4 325 66.8
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.2e-93 347.4 240 68.3
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 1.6e-93 347.1 240 68.8
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 3.5e-93 345.9 325 67.4
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 3.5e-93 345.9 315 67.0
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.7e-92 343.6 325 67.1
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.8e-92 342.4 318 65.1
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 5.0e-92 342.0 304 63.2
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 8.6e-92 341.3 331 63.4
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.1e-91 340.9 309 67.3
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.1e-91 340.9 238 68.1
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 3.3e-91 339.3 325 65.8
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 3.3e-91 339.3 285 66.7
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.0e-89 332.4 194 79.9
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 5.7e-88 328.6 205 77.1
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 2.2e-87 326.6 256 58.2
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.9e-87 326.2 350 65.1
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 3.5e-85 319.3 244 60.2
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 5.6e-83 312.0 215 69.8
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 6.2e-82 308.5 240 65.8
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 6.8e-81 305.1 231 76.6
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 1.5e-80 303.9 295 61.7
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 1.5e-80 303.9 206 75.7
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 6.4e-79 298.5 332 58.1
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 2.0e-77 293.5 332 56.3
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 2.7e-77 293.1 255 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 5.0e-76 288.9 286 50.3
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 1.1e-73 281.2 285 55.8
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 2.0e-72 276.9 206 67.5
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 2.9e-71 273.1 251 59.4
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 1.4e-70 270.8 336 53.6
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.9e-70 270.4 241 61.4
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 3.2e-70 269.6 341 54.8
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 7.1e-70 268.5 249 69.1
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 1.6e-69 267.3 289 56.1
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 4.0e-65 252.7 346 52.3
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 8.9e-65 251.5 168 67.3
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 5.8e-64 248.8 216 69.0
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 6.0e-61 238.8 270 58.5
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.0e-60 236.5 191 62.8
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 5.1e-60 235.7 129 92.2
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 9.6e-59 231.5 148 69.6
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.4e-57 227.6 324 48.8
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.7e-55 220.7 164 79.3
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 4.6e-53 212.6 212 54.2
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 1.1e-49 201.4 136 72.8
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.8e-49 200.7 238 52.1
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 6.9e-49 198.7 212 52.8
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.9e-47 193.4 124 68.5
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 3.8e-47 193.0 157 62.4
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 1.2e-45 188.0 248 39.5
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 6.7e-44 182.2 262 41.2
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.7e-42 176.4 143 65.0
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 8.4e-39 165.2 186 64.5
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 5.5e-38 162.5 135 57.0
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 7.9e-37 158.7 105 76.2
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.1e-35 154.8 239 38.9
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.5e-35 153.7 262 37.0
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 1.2e-32 144.8 252 35.3
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 9.3e-30 135.2 91 69.2
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 6.0e-29 132.5 91 69.2
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 5.1e-28 129.4 91 68.1
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 3.3e-27 126.7 91 65.9
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 5.7e-27 125.9 121 53.7
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.6e-21 107.8 120 50.8
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 3.6e-21 106.7 141 58.9
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 2.3e-20 104.0 83 54.2
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 6.7e-20 102.4 68 73.5
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 8.2e-18 95.5 60 75.0
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 3.1e-17 93.6 173 38.7
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 7.7e-16 89.0 73 63.0
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.2e-14 83.2 65 60.0
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 7.9e-13 79.0 51 72.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 2.3e-12 77.4 55 65.5
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 8.8e-12 75.5 51 70.6
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 1.9e-06 57.8 111 36.0


User provided reference genes

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