Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 9.2e-157 557.0 310 100.0
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.0e-139 500.4 310 92.9
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 9.3e-125 450.7 275 94.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 3.7e-121 438.7 312 82.4
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.9e-120 434.5 374 67.9
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.8e-115 419.9 308 80.8
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 3.3e-114 415.6 312 76.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.6e-114 414.8 313 78.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.6e-113 413.3 312 78.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.6e-113 413.3 313 78.6
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 5.3e-112 408.3 325 77.2
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 6.9e-112 407.9 312 76.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.5e-111 406.8 312 79.5
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.6e-111 406.0 313 78.9
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.6e-111 406.0 312 77.6
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 4.5e-111 405.2 312 74.7
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.0e-110 404.1 304 80.9
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.5e-110 401.4 312 76.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.9e-109 399.8 312 77.6
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 7.1e-109 397.9 303 79.5
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.3e-109 397.5 313 77.3
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.2e-108 397.1 303 79.5
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.1e-108 396.4 308 77.9
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.7e-108 396.0 316 75.3
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.5e-108 395.6 294 77.2
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 6.0e-108 394.8 310 77.4
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.9e-108 394.4 313 77.3
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.3e-107 392.9 312 77.2
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.3e-107 392.9 312 77.2
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 3.0e-107 392.5 311 76.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 5.1e-107 391.7 311 76.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.7e-107 391.0 308 77.3
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.5e-106 390.2 309 76.1
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 3.3e-106 389.0 303 78.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.3e-106 389.0 314 75.2
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 4.3e-106 388.7 311 76.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 7.4e-106 387.9 339 66.7
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 9.7e-106 387.5 314 74.8
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.6e-105 386.7 309 77.0
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.8e-105 386.0 320 74.7
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.4e-104 383.6 311 76.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 3.1e-104 382.5 313 74.8
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 4.1e-104 382.1 309 76.7
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 9.0e-104 380.9 327 69.7
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.2e-103 380.6 317 75.7
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.6e-103 379.4 319 72.1
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.6e-103 379.4 321 73.2
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.4e-103 379.0 312 72.8
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.5e-103 378.6 312 76.0
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.9e-103 378.3 317 72.2
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.3e-102 377.1 314 75.5
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.9e-102 375.9 317 72.9
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 2.9e-102 375.9 306 76.8
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 6.5e-102 374.8 309 75.4
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 3.2e-101 372.5 317 71.6
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 7.9e-100 367.9 371 66.0
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.8e-99 366.7 311 72.3
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.8e-99 366.7 310 71.9
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 6.7e-99 364.8 316 71.8
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.9e-98 363.2 314 73.2
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.7e-97 359.0 274 79.9
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 4.1e-96 355.5 316 71.2
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.0e-95 353.2 310 66.5
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.6e-95 352.8 310 72.3
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.6e-95 352.8 284 73.9
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.5e-95 352.1 257 82.1
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 5.0e-94 348.6 320 70.6
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.5e-93 346.3 277 77.6
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.5e-93 345.1 312 69.2
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.4e-93 344.4 314 71.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.2e-92 344.0 303 72.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 7.9e-92 341.3 322 69.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.8e-91 340.1 304 72.4
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.6e-90 336.3 307 69.7
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.3e-90 335.9 302 72.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.3e-90 335.9 302 72.5
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 4.4e-90 335.5 310 71.0
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 9.7e-90 334.3 305 71.5
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 9.7e-90 334.3 304 71.1
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 9.7e-90 334.3 304 71.1
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.8e-88 330.1 309 70.2
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.8e-88 330.1 309 70.2
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 3.1e-88 329.3 322 68.0
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 4.1e-88 328.9 306 70.3
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 4.1e-88 328.9 309 70.2
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 5.3e-88 328.6 309 69.9
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.2e-86 323.2 310 68.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.5e-86 321.6 318 60.1
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.5e-85 319.7 296 70.3
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.6e-84 315.8 252 78.6
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 8.0e-84 314.7 305 68.9
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.3e-83 313.2 301 67.4
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.0e-83 312.8 301 66.4
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 3.3e-82 309.3 334 64.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.2e-81 306.6 306 63.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.7e-81 305.8 243 79.8
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 4.8e-81 305.4 311 65.3
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.2e-79 300.8 307 61.9
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.6e-79 300.4 313 60.1
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.9e-78 296.2 194 92.3
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.2e-77 292.7 198 89.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.6e-76 290.4 311 65.6
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.3e-74 282.7 182 93.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.0e-67 261.2 284 55.6
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 3.1e-64 249.6 314 51.9
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.6e-63 247.3 228 64.0
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.5e-63 246.1 232 63.4
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.3e-59 233.4 280 54.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.9e-57 225.7 149 95.3
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.4e-56 224.2 159 74.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 5.4e-56 222.2 162 88.3
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.0e-54 218.0 165 81.2
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.7e-54 217.2 149 87.9
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 5.0e-54 215.7 152 90.8
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.3e-53 211.8 246 55.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 9.5e-53 211.5 223 61.4
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.6e-52 209.5 295 50.2
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.7e-49 200.7 318 45.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.2e-49 200.3 317 47.0
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 6.4e-49 198.7 274 48.2
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 6.4e-49 198.7 140 76.4
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.2e-48 194.9 188 71.8
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 5.0e-46 189.1 106 95.3
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.8e-39 165.2 255 49.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 5.0e-38 162.5 124 89.5
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.5e-37 161.0 94 93.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.7e-30 137.5 188 50.0
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.4e-24 115.9 89 75.3
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.0e-22 110.2 112 55.4
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.1e-13 81.6 104 51.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 7.1e-08 62.4 187 29.9
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 2.1e-07 60.8 50 66.0
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 6.0e-07 59.3 32 90.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.8e-06 57.8 36 83.3
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 3.9e-06 56.6 34 85.3


User provided reference genes

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