Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 4.1e-188 661.4 366 100.0
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.6e-160 569.7 372 87.9
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 8.0e-160 567.4 372 87.9
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 7.0e-156 554.3 372 86.0
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.3e-151 539.3 374 83.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.2e-141 506.1 374 79.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 6.1e-91 338.6 383 60.1
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 9.7e-89 331.3 385 55.6
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.4e-86 322.8 382 54.5
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.2e-85 320.1 386 55.4
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 8.5e-85 318.2 383 52.5
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 8.5e-85 318.2 383 52.5
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.0e-82 311.2 377 54.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-80 304.3 378 50.0
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.3e-80 304.3 369 53.7
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 5.3e-79 298.9 379 52.0
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.7e-78 295.0 378 51.3
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.7e-77 293.9 381 52.0
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.5e-77 292.0 382 52.6
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.6e-75 286.2 372 52.2
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.0e-74 284.6 385 48.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.4e-74 284.3 365 51.8
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.0e-74 282.7 317 53.6
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.7e-74 282.0 379 52.5
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.8e-72 276.6 371 49.9
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 4.8e-72 275.8 317 53.0
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.8e-72 275.8 318 58.2
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.1e-71 274.6 376 52.1
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.6e-70 270.8 406 47.3
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.6e-70 270.8 399 48.6
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.0e-69 268.1 396 47.5
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.8e-69 266.2 396 47.7
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 5.0e-69 265.8 396 47.2
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.5e-68 264.2 392 47.4
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.2e-67 261.2 395 45.8
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.6e-67 260.8 407 45.2
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.4e-66 257.7 393 44.0
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.2e-66 255.8 388 45.9
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.2e-66 255.8 382 50.5
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.2e-66 255.8 382 50.5
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.4e-65 253.1 396 45.7
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 5.7e-65 252.3 398 43.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 7.5e-65 251.9 416 42.1
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.7e-64 250.8 306 54.9
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.8e-64 250.0 397 44.8
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.8e-64 250.0 406 44.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.7e-64 249.6 399 44.6
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.7e-64 249.6 394 40.4
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 6.3e-64 248.8 399 43.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.1e-63 248.1 404 46.8
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.4e-63 246.9 405 43.5
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 4.1e-63 246.1 394 43.7
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 4.1e-63 246.1 394 43.7
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 9.1e-63 245.0 380 43.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 9.1e-63 245.0 380 43.4
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.0e-62 243.8 406 46.1
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.0e-62 243.8 402 46.8
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.0e-62 243.8 389 49.1
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.5e-62 242.7 392 45.7
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 4.5e-62 242.7 384 43.0
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 5.9e-62 242.3 413 43.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 2.9e-61 240.0 373 46.6
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.0e-61 239.2 358 46.9
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.9e-60 237.3 394 45.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.5e-60 236.9 391 45.0
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 3.2e-60 236.5 395 44.3
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 4.2e-60 236.1 382 44.5
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 5.5e-60 235.7 384 43.5
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 7.2e-60 235.3 395 44.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.6e-59 233.0 395 44.6
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.0e-58 229.6 352 43.8
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 8.8e-58 228.4 390 44.6
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 3.4e-57 226.5 413 42.9
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.7e-57 225.7 332 48.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.7e-56 224.2 396 44.4
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.2e-56 223.8 399 45.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.2e-56 223.8 404 45.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.3e-56 221.9 390 43.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.1e-55 221.5 398 42.7
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.8e-55 220.7 393 43.5
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.4e-55 220.3 395 44.3
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 5.4e-55 219.2 150 90.0
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.2e-55 218.4 367 47.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.2e-54 218.0 399 42.9
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 5.9e-54 215.7 376 45.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-53 214.9 389 44.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.3e-53 214.5 389 46.0
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.3e-53 214.5 394 41.1
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 6.6e-53 212.2 338 47.9
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.5e-52 211.1 372 44.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.9e-52 210.7 381 40.7
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.3e-52 209.9 338 47.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 5.6e-52 209.1 392 40.8
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 7.3e-52 208.8 402 43.3
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 7.3e-52 208.8 353 44.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.3e-52 208.8 338 46.7
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.3e-50 203.8 222 60.8
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 8.9e-50 201.8 378 39.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.5e-49 201.1 349 41.8
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 3.4e-49 199.9 373 44.0
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.8e-49 198.4 375 45.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.7e-48 197.6 373 43.4
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.0e-45 188.3 275 44.7
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.3e-45 187.2 333 44.4
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.3e-45 187.2 377 40.1
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.0e-45 186.0 376 40.7
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 8.6e-45 185.3 382 42.7
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 2.8e-43 180.3 387 41.1
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 8.0e-43 178.7 378 37.8
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.8e-42 177.6 377 39.8
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.8e-42 177.6 400 35.2
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.3e-42 177.2 319 40.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 4.0e-42 176.4 317 45.7
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 5.2e-42 176.0 384 35.2
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-40 171.4 344 41.9
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.7e-40 169.9 374 39.6
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.1e-39 168.3 343 42.3
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.4e-39 167.9 344 41.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 3.3e-36 156.8 276 48.9
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.6e-35 154.5 383 33.7
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.1e-34 150.2 384 33.3
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.2e-34 149.4 178 52.8
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.2e-33 148.3 385 34.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.5e-33 147.9 362 37.6
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.3e-32 144.8 379 33.2
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.1e-31 139.8 395 32.7
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.5e-28 131.3 180 58.3
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.3e-28 129.8 377 34.2
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.6e-27 127.9 397 33.0
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.4e-26 124.8 374 36.4
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.8e-26 124.4 330 37.3
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 8.9e-26 122.1 326 33.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 5.8e-25 119.4 367 32.4
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 6.4e-24 115.9 303 36.6
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-23 114.8 312 33.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-23 114.8 303 36.6
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.1e-22 110.9 387 31.0
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-21 108.6 311 33.1
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.3e-21 107.5 355 31.0
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.8e-18 97.8 305 33.1
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 3.1e-18 97.1 305 32.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 4.0e-18 96.7 312 31.4
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.4e-17 93.2 322 31.4
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.1e-15 88.6 312 30.1
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-15 88.6 312 30.1
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 7.1e-15 85.9 307 30.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 6.0e-14 82.8 309 32.4
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 8.7e-13 79.0 378 27.8
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 8.7e-13 79.0 304 32.2
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.9e-12 77.8 308 29.5
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.5e-12 77.4 303 31.7
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-11 75.1 307 29.0
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 6.9e-10 69.3 193 35.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 6.9e-10 69.3 193 35.2
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 6.9e-10 69.3 197 34.5
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 3.2e-07 60.5 133 44.4
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.2e-07 60.1 138 34.8


User provided reference genes

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