Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.2e-189 666.4 335 100.0
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.7e-185 652.5 335 97.0
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 3.0e-185 651.7 335 97.0
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 6.6e-185 650.6 335 96.7
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.6e-181 638.6 335 94.9
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.1e-174 615.1 335 89.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.1e-174 615.1 335 89.6
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.2e-173 613.2 335 89.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.6e-173 612.1 335 89.6
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.4e-173 611.3 335 89.6
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.9e-171 605.9 335 88.1
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 4.2e-171 604.7 335 87.8
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 7.1e-171 604.0 335 89.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 9.3e-171 603.6 335 88.1
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 3.9e-169 598.2 335 88.4
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 5.1e-169 597.8 335 88.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.1e-168 596.7 335 87.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 3.3e-168 595.1 335 86.6
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 4.3e-168 594.7 335 87.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 7.3e-168 594.0 335 87.8
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 9.6e-168 593.6 335 86.0
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 9.6e-168 593.6 335 86.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.6e-167 592.8 335 87.5
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.1e-167 592.4 335 86.9
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.1e-167 592.4 335 87.2
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 2.1e-167 592.4 338 86.7
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.1e-167 592.4 335 85.7
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.6e-167 591.7 335 86.6
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 3.6e-167 591.7 335 87.8
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 6.2e-167 590.9 335 86.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 8.1e-167 590.5 335 86.3
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.1e-166 590.1 335 86.3
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.1e-166 590.1 335 85.4
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.4e-166 589.7 335 87.8
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.8e-166 589.3 335 86.9
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.8e-166 589.3 335 86.9
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 3.1e-166 588.6 335 86.9
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 5.3e-166 587.8 335 86.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 6.9e-166 587.4 335 87.2
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 6.9e-166 587.4 336 86.0
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 6.9e-166 587.4 335 85.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 1.5e-165 586.3 336 85.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 2.0e-165 585.9 335 85.1
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.6e-165 585.5 334 85.6
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.5e-165 584.7 335 85.7
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 7.6e-165 583.9 335 85.7
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.9e-164 582.0 335 85.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.8e-164 581.6 335 84.5
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 6.4e-164 580.9 335 85.4
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 8.4e-164 580.5 335 85.4
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.1e-163 580.1 335 84.5
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.1e-163 580.1 335 84.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.4e-163 579.7 352 82.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.4e-163 579.7 347 86.5
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.9e-163 579.3 335 84.2
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.4e-163 578.9 335 84.5
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.2e-163 578.6 335 83.9
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 4.2e-163 578.2 335 85.7
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 4.2e-163 578.2 335 83.9
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.1e-163 577.4 335 83.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 9.3e-163 577.0 335 84.8
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.2e-162 576.6 336 85.1
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.2e-162 576.6 335 84.5
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.6e-162 576.2 335 84.2
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.7e-162 575.5 335 84.8
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.9e-161 571.6 335 85.4
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 6.7e-161 570.9 335 84.2
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.7e-161 570.9 336 83.9
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 6.7e-161 570.9 331 84.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-160 570.1 335 82.7
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.5e-160 569.7 335 82.4
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.5e-160 569.7 315 88.9
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.9e-160 569.3 335 82.7
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.9e-160 569.3 335 84.8
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.5e-160 568.9 335 82.4
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 2.5e-160 568.9 335 82.4
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.5e-160 568.9 335 85.1
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 3.3e-160 568.5 335 82.4
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 3.3e-160 568.5 335 82.4
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 4.3e-160 568.2 335 83.3
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 5.6e-160 567.8 335 82.7
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 7.4e-160 567.4 335 82.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 7.4e-160 567.4 335 83.0
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 9.6e-160 567.0 335 82.4
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 9.6e-160 567.0 335 82.4
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 9.6e-160 567.0 335 82.4
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 1.3e-159 566.6 335 82.7
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 1.3e-159 566.6 335 82.7
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 1.3e-159 566.6 335 82.7
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.6e-159 566.2 335 82.7
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.6e-159 566.2 335 83.3
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.6e-159 566.2 335 84.5
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.1e-159 565.8 335 82.4
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.6e-159 565.1 335 81.5
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 8.1e-159 563.9 335 82.4
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 8.1e-159 563.9 335 82.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 8.1e-159 563.9 335 82.4
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.1e-158 563.5 335 82.4
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.1e-158 563.5 335 81.8
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.4e-158 562.4 335 82.1
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.4e-158 562.4 335 81.5
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.1e-158 562.0 335 82.4
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.1e-158 562.0 335 82.4
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.3e-158 561.2 335 81.5
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 5.3e-158 561.2 317 86.4
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 9.0e-158 560.5 335 82.4
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.2e-157 560.1 317 85.8
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 3.4e-157 558.5 335 81.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.8e-157 557.8 315 87.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.8e-157 557.8 335 82.4
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 7.6e-157 557.4 335 80.3
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.7e-156 556.2 337 80.4
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.4e-155 553.1 317 84.5
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.4e-155 552.4 379 74.1
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 3.2e-155 552.0 317 86.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 5.5e-155 551.2 315 87.6
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 6.0e-154 547.7 335 80.0
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 6.0e-154 547.7 335 80.0
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 8.7e-153 543.9 335 78.5
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.5e-152 543.1 335 78.2
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.3e-152 542.0 322 82.6
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 4.3e-152 541.6 315 84.4
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 9.6e-152 540.4 315 83.5
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.3e-151 540.0 327 82.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.8e-150 536.2 335 77.6
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 6.9e-150 534.3 383 71.8
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.0e-148 530.4 320 81.2
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 8.4e-148 527.3 318 82.1
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 5.5e-147 524.6 335 78.5
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.1e-146 522.7 335 78.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.0e-145 520.4 364 75.0
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.5e-144 515.8 335 72.2
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.1e-142 508.4 335 71.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 5.3e-142 508.1 335 71.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 5.9e-141 504.6 335 72.2
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.7e-138 495.7 335 74.6
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 9.7e-136 487.3 345 69.9
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 5.0e-132 474.9 346 71.4
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 9.4e-131 470.7 391 66.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 3.6e-130 468.8 320 75.6
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.4e-129 466.8 345 67.0
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.1e-126 457.2 342 65.8
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.8e-126 456.4 261 85.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.2e-121 438.3 323 69.7
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.8e-121 437.6 241 89.2
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 3.1e-118 429.1 275 79.6
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.1e-114 414.8 320 66.9
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 8.0e-114 414.5 240 83.8
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.5e-112 410.2 340 67.6
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 7.5e-112 407.9 271 72.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 7.0e-110 401.4 313 65.2
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 5.2e-105 385.2 231 81.8
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 8.0e-98 361.3 211 85.3
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 2.4e-94 349.7 366 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.0e-92 344.4 350 51.4
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 6.8e-89 331.6 376 48.9
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 8.6e-84 314.7 275 57.8
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.1e-82 310.1 196 76.5
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 3.3e-75 286.2 259 62.9
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 1.9e-67 260.4 302 49.7
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 3.1e-65 253.1 151 80.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 4.4e-64 249.2 292 45.5
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.9e-62 243.8 222 59.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.2e-54 216.5 304 41.1
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 7.8e-53 211.8 203 55.7
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.6e-48 196.8 120 80.0
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.6e-48 195.3 182 57.7
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.1e-38 162.2 336 36.9
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 2.9e-31 140.2 75 88.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.0e-24 117.5 69 82.6
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.4e-22 111.3 54 96.3
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.3e-20 104.0 75 64.0
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.7e-18 96.7 61 72.1
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.1e-14 85.1 123 43.1
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 5.5e-14 82.8 60 66.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 6.1e-13 79.3 40 87.5
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 2.2e-07 60.8 55 56.4
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 3.8e-07 60.1 31 87.1
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 1.4e-06 58.2 50 58.0
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.9e-06 57.8 30 80.0
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 4.2e-06 56.6 35 68.6


User provided reference genes

Program Settings