Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1236.12 Capsicum annuum HOM05D009846 ORTHO05D002235 2.4e-92 342.4 213 100.0
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 5.4e-39 165.2 164 78.7
CAN.G1627.5 Capsicum annuum HOM05D009846 ORTHO05D000368 1.2e-38 164.1 155 82.6
CAN.G206.199 Capsicum annuum HOM05D003021 ORTHO05D002235 1.2e-38 164.1 155 72.9
CAN.G289.54 Capsicum annuum HOM05D003021 ORTHO05D002235 7.7e-38 161.4 190 71.6
CAN.G411.100 Capsicum annuum HOM05D009846 ORTHO05D000368 1.7e-37 160.2 198 70.2
CAN.G411.98 Capsicum annuum HOM05D009846 ORTHO05D002235 4.2e-36 155.6 147 85.0
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 9.4e-36 154.5 155 79.4
CAN.G638.54 Capsicum annuum HOM05D009846 ORTHO05D000368 1.3e-32 144.1 185 68.1
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 1.3e-32 144.1 155 77.4
CAN.G411.103 Capsicum annuum HOM05D009846 ORTHO05D000368 2.8e-32 142.9 196 65.3
Solyc02g088580.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 2.4e-31 139.8 155 76.8
Sopen02g033310 Solanum pennellii HOM05D003021 ORTHO05D002235 2.4e-31 139.8 155 76.8
Nitab4.5_0000565g0110 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.8e-26 123.6 155 71.0
CAN.G289.60 Capsicum annuum HOM05D009846 ORTHO05D002235 6.4e-24 115.2 116 91.4
CAN.G411.106 Capsicum annuum HOM05D009846 ORTHO05D002235 1.3e-16 90.9 114 66.7
CAN.G1627.1 Capsicum annuum HOM05D009846 ORTHO05D002235 5.0e-13 79.0 53 69.8
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.1e-12 77.8 97 50.5
Nitab4.5_0000212g0140 Nicotiana tabacum HOM05D003021 ORTHO05D002235 7.3e-12 75.1 97 48.5
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 9.5e-12 74.7 64 57.8
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 3.6e-11 72.8 50 64.0
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 4.7e-11 72.4 63 54.0
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 8.1e-11 71.6 54 61.1
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.1e-10 71.2 54 63.0
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 1.8e-10 70.5 77 51.9
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 1.8e-10 70.5 83 50.6
CAN.G41.13 Capsicum annuum HOM05D009846 ORTHO05D002235 3.1e-10 69.7 99 47.5
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 3.1e-10 69.7 47 66.0
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 5.2e-10 68.9 53 62.3
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 1.2e-09 67.8 83 48.2
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 1.5e-09 67.4 47 63.8
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 2.6e-09 66.6 54 59.3
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.4e-09 66.2 55 56.4
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 3.4e-09 66.2 58 58.6
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 7.5e-09 65.1 47 61.7
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.3e-08 64.3 81 45.7
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 1.3e-08 64.3 53 62.3
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.7e-08 63.9 47 63.8
Hma1.2p1_0221F.1_g093100 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.7e-08 63.9 63 52.4
Nn4g23344 Nelumbo nucifera HOM05D003021 ORTHO05D002235 1.7e-08 63.9 50 60.0
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 2.2e-08 63.5 51 56.9
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 2.2e-08 63.5 50 62.0
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.2e-08 63.5 50 62.0
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 4.9e-08 62.4 65 53.8
Glyma.08G241800 Glycine max HOM05D003021 ORTHO05D002235 6.4e-08 62.0 55 52.7
Rhsim09G0002000 Rhododendron simsii HOM05D001654 ORTHO05D002235 6.4e-08 62.0 46 63.0
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 8.3e-08 61.6 49 59.2
Rhsim06G0013300 Rhododendron simsii HOM05D003021 ORTHO05D002235 8.3e-08 61.6 46 63.0
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.1e-07 61.2 50 60.0
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.4e-07 60.8 55 56.4
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 1.9e-07 60.5 68 47.1
Glyma.19G027500 Glycine max HOM05D003021 ORTHO05D002235 1.9e-07 60.5 49 57.1
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 1.9e-07 60.5 50 58.0
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 3.2e-07 59.7 55 50.9
Thhalv10013405m.g Eutrema salsugineum HOM05D009950 ORTHO05D002235 4.1e-07 59.3 58 53.4
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 4.1e-07 59.3 55 58.2
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 5.4e-07 58.9 45 60.0
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 5.4e-07 58.9 55 52.7
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 5.4e-07 58.9 57 56.1
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 5.4e-07 58.9 46 63.0
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 7.1e-07 58.5 68 41.2
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 7.1e-07 58.5 47 57.4
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 7.1e-07 58.5 50 54.0
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 7.1e-07 58.5 50 58.0
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 7.1e-07 58.5 73 49.3
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 1.2e-06 57.8 55 52.7
GSVIVG01011491001 Vitis vinifera HOM05D003021 ORTHO05D002235 1.2e-06 57.8 47 61.7
AL6G26280 Arabidopsis lyrata HOM05D009950 ORTHO05D002235 1.6e-06 57.4 44 61.4
ATR0111G037 Amborella trichopoda HOM05D003021 ORTHO05D002235 2.1e-06 57.0 67 46.3
Sp6g28670 Schrenkiella parvula HOM05D009950 ORTHO05D002235 2.1e-06 57.0 44 61.4
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 2.7e-06 56.6 45 57.8
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 2.7e-06 56.6 56 53.6
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 3.5e-06 56.2 45 57.8
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 3.5e-06 56.2 49 57.1
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 4.6e-06 55.8 46 54.3
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 6.0e-06 55.5 46 56.5
THA.LOC104823896 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 6.0e-06 55.5 59 49.2
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 6.0e-06 55.5 55 47.3


User provided reference genes

Program Settings