Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.1e-84 317.0 219 100.0
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 3.3e-60 235.7 188 87.2
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 3.3e-60 235.7 188 87.2
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 2.0e-57 226.5 184 84.2
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.5e-49 200.3 188 58.5
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.2e-48 196.4 187 77.0
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.9e-47 193.4 187 72.2
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 5.5e-47 191.8 188 66.5
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.2e-46 190.7 188 70.7
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 3.6e-46 189.1 188 61.7
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 3.6e-46 189.1 188 64.4
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 4.6e-46 188.7 188 66.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 7.9e-46 188.0 188 62.8
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.0e-45 187.6 188 78.2
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.8e-45 186.8 188 63.3
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 3.9e-45 185.7 188 63.3
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 8.8e-45 184.5 188 70.2
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.5e-44 183.7 188 62.2
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 1.5e-44 183.7 188 64.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.5e-44 183.7 188 66.0
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 3.3e-44 182.6 188 64.4
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 7.4e-44 181.4 188 66.0
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 7.4e-44 181.4 188 58.0
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 9.7e-44 181.0 188 62.2
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.7e-43 180.3 188 66.5
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 1.7e-43 180.3 188 72.9
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.2e-43 179.9 188 62.2
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 2.2e-43 179.9 188 63.3
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.7e-43 179.1 188 63.3
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 8.2e-43 177.9 189 62.4
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.1e-42 177.6 189 62.4
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-42 176.8 188 64.4
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.8e-42 176.8 188 64.4
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 4.1e-42 175.6 187 69.5
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.9e-42 174.9 188 72.3
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 9.1e-42 174.5 188 68.6
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 1.2e-41 174.1 188 56.9
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 2.0e-41 173.3 184 68.5
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.6e-41 172.9 188 69.7
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 4.5e-41 172.2 188 68.1
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 5.9e-41 171.8 187 65.8
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 7.7e-41 171.4 188 61.7
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.2e-40 169.9 187 65.2
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 2.9e-40 169.5 184 71.7
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 3.8e-40 169.1 188 63.3
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 5.0e-40 168.7 189 63.0
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 5.0e-40 168.7 188 64.9
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.5e-39 166.4 188 61.7
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.7e-38 162.9 188 62.8
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.7e-38 162.9 188 63.8
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.7e-38 162.2 188 64.9
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 7.9e-38 161.4 188 70.7
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.4e-37 160.6 188 57.4
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.4e-37 160.6 188 64.9
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.4e-37 160.6 188 62.2
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 1.4e-37 160.6 188 67.6
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.3e-37 159.8 188 65.4
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 3.9e-37 159.1 188 67.0
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 3.9e-37 159.1 188 69.1
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 2.0e-36 156.8 188 59.6
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.0e-36 156.8 184 65.8
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 3.3e-36 156.0 189 59.8
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 3.3e-36 156.0 188 56.4
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 4.4e-36 155.6 188 66.5
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 7.4e-36 154.8 188 61.7
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.7e-35 152.5 188 47.9
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 6.3e-35 151.8 186 61.8
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.1e-34 151.0 189 68.3
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 1.4e-34 150.6 188 62.2
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.8e-34 150.2 188 70.2
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 1.8e-34 150.2 188 62.8
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.4e-34 149.8 189 60.3
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 2.4e-34 149.8 188 61.7
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 4.1e-34 149.1 187 60.4
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 9.1e-34 147.9 188 56.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.2e-33 147.5 188 65.4
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 7.7e-33 144.8 191 52.9
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 1.7e-32 143.7 188 57.4
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.9e-32 142.9 193 53.4
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 3.8e-32 142.5 184 57.1
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 5.0e-32 142.1 188 62.8
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 8.5e-32 141.4 189 45.0
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.1e-31 141.0 188 57.4
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.5e-31 140.6 187 64.7
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 4.2e-31 139.0 188 64.9
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 7.2e-31 138.3 188 61.7
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 9.4e-31 137.9 188 63.3
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.1e-30 136.7 187 67.4
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 1.0e-29 134.4 187 66.8
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.0e-29 134.4 187 66.8
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 1.0e-29 134.4 192 60.4
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.4e-29 134.0 188 53.7
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.4e-29 134.0 188 46.8
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.0e-28 130.2 189 59.3
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.6e-28 129.8 187 65.8
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 6.3e-27 125.2 188 52.1
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 5.3e-26 122.1 188 55.3
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.6e-25 120.6 113 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 2.2e-24 116.7 190 53.2
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 2.2e-24 116.7 188 47.3
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 3.2e-23 112.8 188 47.9
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.2e-23 112.5 188 58.0
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 7.2e-23 111.7 188 57.4
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 7.2e-23 111.7 188 57.4
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 9.4e-23 111.3 188 60.6
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.7e-22 109.0 193 45.1
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 8.0e-22 108.2 193 45.1
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.0e-21 107.8 191 46.1
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.8e-21 107.1 195 46.2
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 5.2e-21 105.5 188 56.4
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.2e-20 104.4 188 55.9
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.2e-19 100.1 190 39.5
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 2.8e-19 99.8 188 53.2
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 3.7e-19 99.4 188 51.6
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.0e-17 93.6 188 42.0
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.9e-16 89.7 188 52.7
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.0e-13 79.7 53 67.9
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 5.7e-12 75.5 53 62.3
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.3e-11 74.3 49 67.3
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 7.0e-10 68.6 169 36.7
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 3.5e-09 66.2 191 31.9
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.0e-08 64.7 43 67.4
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.6e-06 57.4 36 75.0
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.8e-06 56.6 114 54.4
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.7e-06 55.8 192 28.1


User provided reference genes

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