Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 3.6e-39 164.5 84 100.0
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 7.6e-13 77.0 37 83.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 7.6e-13 77.0 36 83.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 9.9e-13 76.6 46 65.2
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 8.4e-12 73.6 35 82.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.1e-11 73.2 36 80.6
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.1e-11 73.2 36 80.6
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.1e-11 73.2 36 80.6
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 4.1e-11 71.2 35 77.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.1e-11 71.2 35 77.1
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.1e-11 71.2 35 80.0
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.1e-11 71.2 35 80.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 7.1e-11 70.5 46 58.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.7e-10 68.6 33 78.8
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.7e-10 68.6 33 78.8
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.7e-10 68.6 33 78.8
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 3.5e-10 68.2 39 66.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.5e-10 68.2 39 66.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.5e-10 68.2 35 71.4
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 3.5e-10 68.2 39 66.7
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.5e-10 68.2 33 75.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.6e-10 67.8 35 71.4
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 4.6e-10 67.8 35 71.4
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 6.0e-10 67.4 31 80.6
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.8e-10 67.0 35 68.6
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.8e-10 67.0 35 68.6
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 7.8e-10 67.0 39 66.7
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.0e-09 66.6 46 56.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.0e-09 66.6 33 72.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.0e-09 66.6 35 68.6
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.0e-09 66.6 34 70.6
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.0e-09 66.6 33 72.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.3e-09 66.2 35 65.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.3e-09 66.2 34 73.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.3e-09 66.2 39 64.1
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.3e-09 66.2 33 72.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.3e-09 66.2 31 77.4
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.3e-09 66.2 69 43.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.7e-09 65.9 35 65.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.7e-09 65.9 31 77.4
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.7e-09 65.9 31 77.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.7e-09 65.9 31 77.4
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.3e-09 65.5 34 73.5
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.3e-09 65.5 34 73.5
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.3e-09 65.5 36 66.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.3e-09 65.5 35 65.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.0e-09 65.1 31 77.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.0e-09 65.1 33 63.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 3.9e-09 64.7 35 77.1
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.9e-09 64.7 35 65.7
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.9e-09 64.7 35 65.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 3.9e-09 64.7 34 70.6
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.9e-09 64.7 34 70.6
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.9e-09 64.7 33 69.7
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.9e-09 64.7 37 64.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 3.9e-09 64.7 33 72.7
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.9e-09 64.7 31 74.2
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.1e-09 64.3 33 69.7
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 5.1e-09 64.3 33 72.7
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.1e-09 64.3 31 71.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.1e-09 64.3 31 71.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 5.1e-09 64.3 35 68.6
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 5.1e-09 64.3 69 43.5
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 5.1e-09 64.3 69 43.5
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 5.1e-09 64.3 31 77.4
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 5.1e-09 64.3 39 64.1
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.1e-09 64.3 33 72.7
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 6.6e-09 63.9 33 72.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 6.6e-09 63.9 40 60.0
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.6e-09 63.9 31 71.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.6e-09 63.9 35 68.6
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 8.7e-09 63.5 31 74.2
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 8.7e-09 63.5 37 62.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 8.7e-09 63.5 35 68.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.1e-08 63.2 33 72.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.1e-08 63.2 33 72.7
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.5e-08 62.8 34 67.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.5e-08 62.8 31 71.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-08 62.8 34 67.6
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.5e-08 62.8 69 40.6
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.5e-08 62.8 35 65.7
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.9e-08 62.4 32 71.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.3e-08 61.6 33 63.6
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 3.3e-08 61.6 31 67.7
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.3e-08 61.6 31 74.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 4.3e-08 61.2 67 47.8
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.3e-08 61.2 33 69.7
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.6e-08 60.8 35 60.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 7.3e-08 60.5 31 67.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 7.3e-08 60.5 33 66.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 7.3e-08 60.5 31 67.7
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 7.3e-08 60.5 31 74.2
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 9.6e-08 60.1 39 59.0
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.2e-07 59.7 33 63.6
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-07 59.7 31 71.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.2e-07 59.7 31 67.7
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.6e-07 59.3 33 63.6
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.1e-07 58.9 31 64.5
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.8e-07 58.5 31 64.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 4.7e-07 57.8 65 44.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.7e-07 57.8 33 60.6
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 4.7e-07 57.8 31 64.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 4.7e-07 57.8 31 64.5
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 4.7e-07 57.8 31 64.5
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 6.2e-07 57.4 33 60.6
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 6.2e-07 57.4 31 64.5
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 6.2e-07 57.4 33 60.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.2e-07 57.4 33 60.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.2e-07 57.4 33 60.6
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 6.2e-07 57.4 31 64.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 6.2e-07 57.4 29 79.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 6.2e-07 57.4 31 64.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 8.1e-07 57.0 31 64.5
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 8.1e-07 57.0 31 64.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 8.1e-07 57.0 31 67.7
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-06 56.2 31 64.5
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.4e-06 56.2 31 64.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.8e-06 55.8 35 54.3
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.4e-06 55.5 31 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.1e-06 55.1 60 40.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 3.1e-06 55.1 31 61.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.1e-06 55.1 31 61.3
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-06 54.7 31 61.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 4.0e-06 54.7 33 51.5
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 5.2e-06 54.3 31 58.1
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.2e-06 54.3 33 54.5
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 6.9e-06 53.9 28 71.4
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 6.9e-06 53.9 41 46.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 9.0e-06 53.5 33 54.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 9.0e-06 53.5 33 57.6


User provided reference genes

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