Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.5e-73 279.6 169 100.0
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 8.0e-62 240.7 166 88.6
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.9e-61 238.4 167 88.6
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.4e-58 229.2 166 84.3
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.1e-50 203.8 166 78.3
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.6e-49 199.9 164 78.7
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.5e-49 198.7 165 77.0
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 8.5e-48 194.1 166 74.1
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.5e-47 193.4 159 78.6
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 5.2e-45 184.9 166 77.1
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.6e-44 182.6 166 72.3
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.4e-44 181.8 165 61.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.1e-42 177.2 173 69.4
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.1e-42 177.2 176 63.1
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 3.1e-42 175.6 166 57.8
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 4.1e-42 175.3 166 72.9
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 5.4e-42 174.9 168 69.6
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 2.7e-41 172.6 120 75.8
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.5e-41 172.2 170 56.5
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 4.5e-41 171.8 167 68.9
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 4.5e-41 171.8 176 65.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.3e-40 170.2 166 57.2
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.7e-40 169.9 163 72.4
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 3.8e-40 168.7 150 74.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.0e-40 168.3 168 55.4
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 8.6e-40 167.5 166 62.7
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.5e-39 166.0 169 53.3
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 4.2e-39 165.2 164 64.0
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 4.2e-39 165.2 173 58.4
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.5e-39 164.9 168 54.8
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.2e-39 164.5 165 54.5
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 7.2e-39 164.5 175 62.9
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 7.2e-39 164.5 172 54.7
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 9.5e-39 164.1 177 52.5
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 9.5e-39 164.1 167 53.9
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.2e-38 163.7 168 52.4
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.6e-38 163.3 169 53.8
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.6e-38 163.3 169 56.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 2.1e-38 162.9 173 54.9
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 2.8e-38 162.5 167 55.7
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.6e-38 162.2 169 53.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.6e-38 162.2 165 55.8
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.1e-38 161.4 174 62.1
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.0e-38 161.0 174 62.1
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 8.0e-38 161.0 174 62.1
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.0e-37 160.6 167 52.7
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.0e-37 160.6 168 64.3
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.0e-37 160.6 164 51.8
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.0e-37 160.6 174 60.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.4e-37 160.2 169 53.8
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 2.3e-37 159.5 167 52.1
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 2.3e-37 159.5 166 62.7
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 4.0e-37 158.7 164 54.3
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 5.2e-37 158.3 170 50.6
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.2e-37 158.3 179 52.5
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 6.8e-37 157.9 178 64.6
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 8.9e-37 157.5 169 52.7
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.0e-36 156.4 166 52.4
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.0e-36 156.4 166 52.4
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 4.4e-36 155.2 171 51.5
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 4.4e-36 155.2 166 54.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 5.7e-36 154.8 157 65.6
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 5.7e-36 154.8 169 52.1
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 7.5e-36 154.5 165 53.3
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.3e-35 153.7 163 61.3
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.8e-35 152.5 169 65.7
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.9e-35 151.8 166 52.4
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 6.3e-35 151.4 163 68.7
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 6.3e-35 151.4 170 49.4
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 6.3e-35 151.4 166 59.0
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 8.3e-35 151.0 170 58.8
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 8.3e-35 151.0 165 52.7
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.1e-34 150.6 163 52.1
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.8e-34 149.8 106 92.5
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.4e-34 149.4 167 65.3
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 3.1e-34 149.1 157 65.0
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 5.4e-34 148.3 162 53.7
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.4e-34 148.3 106 92.5
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 2.7e-33 146.0 171 49.1
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.3e-32 143.7 186 60.2
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.3e-32 143.7 156 63.5
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.7e-32 143.3 171 48.0
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.3e-32 142.9 171 48.5
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.6e-32 141.0 169 47.9
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.5e-31 140.2 179 58.7
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.5e-31 140.2 185 47.0
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.5e-31 139.4 161 46.0
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 3.3e-31 139.0 173 44.5
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 5.6e-31 138.3 172 46.5
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 5.6e-31 138.3 174 46.6
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 5.6e-31 138.3 164 48.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.2e-30 137.1 173 43.9
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.2e-30 137.1 166 50.6
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.6e-30 136.7 169 46.2
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.6e-30 136.7 171 46.2
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.6e-30 136.7 118 76.3
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.1e-30 136.3 170 48.8
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.1e-30 136.3 175 47.4
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 4.7e-30 135.2 171 46.2
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 4.7e-30 135.2 171 46.2
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 4.7e-30 135.2 171 46.8
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 6.1e-30 134.8 177 44.1
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 6.1e-30 134.8 169 48.5
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.0e-29 134.0 171 45.6
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 3.1e-29 132.5 105 62.9
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.2e-28 130.6 106 76.4
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.6e-28 129.4 168 45.2
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.6e-28 129.4 112 57.1
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 5.8e-28 128.3 170 46.5
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 5.8e-28 128.3 171 43.9
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 2.9e-27 125.9 169 42.6
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.4e-26 122.9 174 42.0
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.1e-26 122.1 238 37.8
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.2e-25 120.6 106 56.6
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.0e-25 119.8 129 52.7
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 3.5e-25 119.0 106 55.7
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 7.8e-25 117.9 168 42.9
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 1.7e-24 116.7 182 48.9
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 3.3e-23 112.5 112 52.7
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.2e-22 110.5 176 44.3
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.1e-22 109.8 116 51.7
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.6e-22 109.0 104 54.8
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.4e-21 107.1 107 56.1
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.8e-21 106.7 113 49.6
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.1e-21 105.9 131 46.6
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.4e-20 102.4 107 57.9
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 9.8e-20 100.9 174 39.1
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.4e-18 96.3 60 81.7
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.0e-16 89.4 183 36.1
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 8.6e-16 87.8 80 58.8
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.8e-13 80.1 103 44.7
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.8e-13 80.1 103 44.7
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 8.9e-13 77.8 165 32.1
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 1.5e-12 77.0 97 47.4
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 4.1e-10 68.9 87 46.0
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 2.3e-08 63.2 66 86.4
ATR1127G058 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.6e-06 57.0 60 50.0
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 6.2e-06 55.1 130 33.8


User provided reference genes

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