Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 2.2e-252 875.2 456 100.0
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 6.4e-183 644.4 428 80.1
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.1e-180 634.8 428 79.2
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 6.9e-177 624.4 428 77.8
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.9e-166 589.7 429 76.2
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.8e-154 548.5 429 71.8
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 2.4e-153 546.2 427 70.5
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 2.5e-86 323.6 437 48.1
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 5.6e-78 295.8 450 46.4
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 5.1e-71 272.7 434 44.2
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 3.3e-70 270.0 434 45.4
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 2.8e-69 266.9 462 43.5
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.4e-68 263.8 456 43.0
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.9e-68 262.3 442 43.2
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 4.9e-66 256.1 455 41.8
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 6.4e-66 255.8 450 42.0
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.6e-64 249.6 441 41.5
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.3e-63 248.1 458 39.7
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 6.7e-63 245.7 146 97.3
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 6.7e-63 245.7 462 40.0
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.3e-61 241.5 440 40.9
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.1e-61 240.7 440 40.7
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.4e-60 237.3 448 39.3
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.1e-60 236.9 436 40.6
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 6.9e-60 235.7 453 41.1
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.5e-59 234.6 442 39.8
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.0e-58 231.9 449 37.6
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.3e-58 231.5 443 38.6
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 4.9e-58 229.6 459 39.2
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 6.5e-58 229.2 464 39.9
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.1e-57 228.4 454 39.4
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.1e-57 228.4 445 39.1
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 3.2e-57 226.9 455 37.8
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 4.2e-57 226.5 447 38.9
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 2.1e-56 224.2 448 37.9
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 3.5e-56 223.4 451 37.9
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 3.5e-56 223.4 466 38.6
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.8e-55 221.1 448 38.4
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 2.3e-55 220.7 448 39.7
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.9e-55 219.9 448 37.9
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 4.3e-54 216.5 447 37.8
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 4.3e-54 216.5 447 38.5
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 9.7e-54 215.3 454 39.9
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.3e-53 214.9 460 36.7
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.8e-53 213.8 447 37.1
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 6.3e-53 212.6 436 37.6
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 6.3e-53 212.6 453 38.6
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 6.9e-52 209.1 443 37.0
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 9.0e-52 208.8 535 33.6
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.5e-51 208.0 459 38.3
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 5.9e-51 206.1 449 37.9
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 7.7e-51 205.7 461 38.6
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.7e-50 204.5 443 36.8
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 2.9e-50 203.8 475 36.0
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 3.8e-50 203.4 450 34.7
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.0e-50 203.0 441 37.0
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.9e-49 201.1 463 37.4
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.5e-49 200.7 467 36.0
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 4.2e-49 199.9 449 38.1
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 9.4e-49 198.7 466 35.6
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.7e-48 197.2 433 37.0
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 3.6e-48 196.8 429 37.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 7.9e-48 195.7 461 36.0
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.8e-47 194.5 380 38.4
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.8e-47 194.5 448 36.6
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.8e-47 194.5 431 35.0
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.3e-47 194.1 433 36.5
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.0e-47 193.7 433 37.0
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.1e-47 193.0 447 36.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 1.5e-46 191.4 482 35.5
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 5.7e-46 189.5 444 34.7
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 7.4e-46 189.1 469 36.7
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.7e-45 188.0 445 34.6
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.2e-45 187.6 441 36.1
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 2.8e-45 187.2 438 35.4
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 3.7e-45 186.8 456 34.4
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 6.3e-45 186.0 436 35.1
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 6.3e-45 186.0 452 35.6
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.4e-44 184.1 437 36.2
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 4.1e-44 183.3 454 36.3
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 5.3e-44 183.0 115 96.5
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 9.1e-44 182.2 290 44.5
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.5e-43 181.4 421 34.7
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 7.7e-43 179.1 321 41.1
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 7.7e-43 179.1 455 36.0
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 3.8e-42 176.8 451 34.8
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 5.0e-42 176.4 430 37.0
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 6.5e-42 176.0 468 34.8
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.4e-41 174.9 463 34.3
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.9e-41 174.5 433 33.7
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 4.2e-41 173.3 464 35.6
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 7.9e-40 169.1 438 36.1
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 7.9e-40 169.1 436 34.2
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 1.0e-39 168.7 435 35.2
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.4e-39 168.3 448 33.9
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 3.9e-39 166.8 456 34.0
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 7.4e-38 162.5 447 34.5
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 7.4e-38 162.5 451 33.0
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 9.7e-38 162.2 454 33.7
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.3e-37 161.8 440 34.8
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.3e-37 161.8 429 32.4
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.4e-36 157.5 446 33.4
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 3.1e-36 157.1 425 35.3
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 3.1e-36 157.1 427 32.3
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.5e-35 154.8 452 33.2
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.9e-33 147.9 430 31.2
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.2e-33 147.1 260 40.0
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 7.2e-33 146.0 297 36.7
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 4.7e-32 143.3 435 31.3
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 2.3e-31 141.0 441 32.4
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 3.9e-31 140.2 437 29.3
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 3.9e-31 140.2 432 32.6
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 5.2e-31 139.8 480 29.4
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 2.6e-30 137.5 451 34.4
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 3.3e-30 137.1 295 40.7
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.4e-30 136.7 426 31.9
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 3.7e-29 133.7 441 29.9
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 8.2e-29 132.5 478 29.5
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.6e-27 128.3 430 29.3
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 5.9e-27 126.3 437 29.7
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.0e-26 125.6 422 30.8
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.0e-26 125.6 441 31.3
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 3.2e-25 120.6 411 28.7
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 2.1e-24 117.9 299 32.8
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.6e-24 117.1 449 29.8
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 6.1e-24 116.3 263 36.9
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.0e-23 115.5 437 27.9
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 1.0e-23 115.5 431 28.1
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 6.7e-23 112.8 283 31.1
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 8.8e-23 112.5 397 29.7
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.0e-22 111.3 353 28.0
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 4.4e-22 110.2 411 27.5
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.7e-21 108.2 342 32.5
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.8e-21 106.7 426 28.2
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 8.3e-21 105.9 399 28.3
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.4e-20 105.1 347 27.4
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 3.1e-20 104.0 434 27.2
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.1e-20 104.0 432 27.1
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.5e-19 100.5 460 26.3
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 5.9e-19 99.8 280 33.2
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 7.7e-19 99.4 346 30.3
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.9e-18 97.4 465 26.5
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 3.8e-18 97.1 258 35.3
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 5.0e-18 96.7 134 48.5
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 5.5e-17 93.2 430 26.7
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.7e-16 90.9 288 31.6
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.7e-16 90.9 352 28.7
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.6e-16 90.5 418 27.3
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 4.7e-16 90.1 433 26.3
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 8.0e-16 89.4 429 28.7
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.8e-15 88.2 275 30.5
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 6.8e-15 86.3 273 30.8
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 5.7e-14 83.2 273 30.0
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 9.8e-14 82.4 267 33.7
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 1.3e-13 82.0 143 40.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.7e-13 81.6 420 27.1
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.8e-13 80.1 273 28.9
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 6.3e-13 79.7 271 29.9
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 6.3e-13 79.7 430 27.0
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.8e-12 78.2 140 40.0
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 7.0e-12 76.3 271 29.5
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 7.0e-12 76.3 417 25.7
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 9.1e-12 75.9 142 43.0
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 5.9e-11 73.2 430 25.6
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.0e-10 72.4 416 24.8
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 2.3e-10 71.2 125 40.8
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 2.9e-10 70.9 153 37.3
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 5.0e-10 70.1 228 29.8
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.9e-09 68.2 164 34.1
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 4.2e-09 67.0 152 35.5
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.2e-08 65.5 133 36.1
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.8e-08 64.3 144 41.7
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 8.0e-08 62.8 141 36.2
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 2.3e-07 61.2 346 23.4
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.0e-07 60.8 210 30.0
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 4.0e-07 60.5 161 34.8
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 8.9e-07 59.3 80 43.8
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 2.6e-06 57.8 182 33.0


User provided reference genes

Program Settings