Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 1.5e-173 612.8 335 100.0
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 1.3e-161 573.2 359 90.0
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 3.9e-145 518.5 339 82.6
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 4.3e-144 515.0 339 82.6
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.0e-140 501.5 345 81.4
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 8.7e-137 490.7 345 80.0
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.3e-132 476.9 339 78.2
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 2.6e-128 462.6 340 77.4
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 3.0e-89 332.8 383 53.3
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 9.8e-80 301.2 336 54.8
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.6e-74 283.9 353 50.7
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 1.7e-71 273.9 386 49.7
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.1e-69 266.9 365 48.2
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.1e-69 266.9 357 48.5
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 5.1e-68 262.3 372 47.6
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.9e-67 260.4 357 48.5
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 3.6e-66 256.1 359 46.0
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 6.2e-66 255.4 367 46.9
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 3.1e-65 253.1 304 51.0
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 4.0e-65 252.7 360 45.8
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 4.4e-64 249.2 350 48.0
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.2e-63 246.9 362 45.6
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 3.2e-62 243.0 381 43.8
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 2.7e-61 240.0 376 43.9
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.3e-60 237.7 384 45.3
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.7e-60 237.3 384 42.7
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.9e-60 236.1 340 47.9
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 4.3e-59 232.6 370 44.1
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 9.6e-59 231.5 363 43.5
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.6e-58 230.7 389 42.2
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 8.1e-58 228.4 385 43.1
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.8e-57 227.3 387 44.4
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 6.9e-57 225.3 383 41.0
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.2e-56 224.6 373 42.1
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.5e-56 224.2 384 43.5
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 4.4e-56 222.6 388 40.7
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 7.6e-56 221.9 358 44.1
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 7.6e-56 221.9 384 42.2
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.3e-55 221.1 373 42.1
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 3.8e-55 219.5 358 43.9
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 4.9e-55 219.2 386 41.2
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 3.2e-54 216.5 369 43.1
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.4e-54 215.7 354 43.8
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 7.1e-54 215.3 363 41.9
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 9.3e-54 214.9 390 42.1
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 9.3e-54 214.9 374 40.4
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 9.3e-54 214.9 385 42.6
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 2.7e-53 213.4 387 39.3
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 4.6e-53 212.6 376 41.5
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 4.6e-53 212.6 329 45.3
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 4.6e-53 212.6 413 39.5
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 7.8e-53 211.8 413 39.5
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 1.3e-52 211.1 370 41.4
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 6.6e-52 208.8 328 43.3
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 8.7e-52 208.4 401 39.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.5e-51 206.8 373 40.8
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.3e-51 206.5 384 41.9
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 5.6e-51 205.7 353 41.6
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.6e-51 205.7 413 38.7
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.6e-51 204.9 384 38.3
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.3e-50 204.5 379 39.3
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.6e-50 204.1 373 40.8
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.6e-50 203.0 326 44.8
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 3.6e-50 203.0 390 38.7
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 8.1e-50 201.8 379 39.3
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 3.1e-49 199.9 379 39.6
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.1e-49 199.9 313 45.7
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 4.0e-49 199.5 382 39.0
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 5.3e-49 199.1 392 38.5
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 9.0e-49 198.4 392 38.5
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 9.0e-49 198.4 350 41.7
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 9.0e-49 198.4 351 41.6
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 2.0e-48 197.2 380 38.7
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 3.4e-48 196.4 384 37.0
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 4.5e-48 196.1 270 49.3
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.8e-48 195.7 353 40.8
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 9.9e-48 194.9 380 39.5
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.7e-47 194.1 328 44.5
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 3.8e-47 193.0 328 42.1
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 8.4e-47 191.8 432 36.3
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.4e-46 191.0 347 41.2
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.4e-46 191.0 349 41.3
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.9e-46 190.7 366 42.1
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.2e-46 189.9 385 39.0
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 9.3e-46 188.3 391 38.6
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 1.2e-45 188.0 342 41.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 2.1e-45 187.2 382 38.7
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 4.6e-45 186.0 349 39.8
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.6e-45 186.0 384 36.2
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 7.9e-45 185.3 358 38.5
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 7.9e-45 185.3 391 38.6
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 5.1e-44 182.6 115 96.5
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 6.7e-44 182.2 279 40.5
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 6.7e-44 182.2 330 42.1
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 3.3e-43 179.9 381 36.0
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.3e-43 179.5 289 42.6
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 3.7e-42 176.4 355 38.0
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 6.2e-42 175.6 384 38.0
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.1e-41 174.9 342 38.9
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.4e-41 174.5 368 36.1
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 3.1e-41 173.3 369 34.7
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.1e-41 173.3 419 34.1
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 5.3e-41 172.6 363 37.7
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 3.4e-40 169.9 351 37.3
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 7.6e-40 168.7 368 35.6
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 6.4e-39 165.6 339 39.5
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.2e-38 162.9 376 35.9
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.6e-37 161.0 366 34.2
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 6.0e-37 159.1 345 38.6
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 7.9e-37 158.7 369 35.2
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 1.8e-36 157.5 360 35.0
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.8e-36 157.5 290 41.7
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.0e-36 156.8 359 36.5
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 6.7e-36 155.6 348 36.2
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 8.7e-36 155.2 364 34.9
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.5e-35 154.5 397 34.8
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.9e-35 154.1 380 35.3
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.6e-34 151.0 379 34.6
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 2.8e-34 150.2 376 33.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 2.8e-34 150.2 364 33.8
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.8e-33 147.5 366 32.8
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.4e-33 147.1 355 35.2
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 3.1e-33 146.7 296 36.8
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 9.0e-33 145.2 368 34.8
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 9.0e-33 145.2 366 32.2
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.5e-32 144.4 340 33.5
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.5e-32 144.4 368 32.3
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 3.4e-32 143.3 368 31.8
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.0e-31 141.7 371 33.7
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.7e-31 141.0 380 33.7
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 1.7e-31 141.0 216 44.0
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.4e-30 137.9 369 33.9
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.9e-30 137.5 365 32.9
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 7.1e-30 135.6 300 36.3
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 7.1e-30 135.6 300 36.3
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 9.3e-30 135.2 369 31.2
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 1.6e-29 134.4 241 41.9
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.7e-29 133.7 434 32.7
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 1.8e-28 131.0 356 32.3
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.0e-28 130.2 438 32.0
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 5.1e-28 129.4 365 32.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.3e-26 124.8 286 33.9
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 3.7e-26 123.2 381 32.0
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.8e-25 120.9 368 30.7
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.1e-25 120.2 374 28.9
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 6.9e-25 119.0 329 34.3
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 9.0e-25 118.6 213 39.9
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 4.5e-24 116.3 256 34.4
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 7.6e-24 115.5 250 34.8
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 7.6e-24 115.5 213 38.5
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 2.2e-23 114.0 224 40.6
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 3.8e-23 113.2 223 38.1
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.4e-22 111.3 214 38.3
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 1.9e-22 110.9 226 40.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 7.2e-22 109.0 229 34.9
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 7.9e-21 105.5 354 30.5
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.4e-20 104.8 225 36.9
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.5e-19 101.3 286 34.6
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.9e-19 100.9 227 38.8
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.5e-19 100.5 319 30.4
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.3e-19 100.1 351 29.9
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.3e-19 100.1 277 33.9
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.7e-18 97.8 198 37.4
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 6.3e-18 95.9 226 33.6
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 8.2e-18 95.5 210 34.8
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 6.9e-17 92.4 234 34.6
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.1e-17 92.0 373 30.6
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.5e-16 91.3 229 38.0
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 5.9e-16 89.4 217 34.1
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.9e-16 89.4 219 33.3
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.8e-15 86.7 222 32.9
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.1e-14 85.1 239 35.6
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.4e-14 84.7 203 35.0
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 1.2e-13 81.6 236 35.6
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.6e-13 81.3 323 31.0
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 5.7e-11 72.8 225 29.8
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 9.7e-11 72.0 116 50.9
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 2.8e-10 70.5 117 47.9
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 6.3e-10 69.3 194 30.4
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 1.5e-08 64.7 130 38.5
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.0e-07 62.0 205 29.8
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 3.2e-06 57.0 230 30.9
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 5.5e-06 56.2 223 29.6
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 7.2e-06 55.8 221 28.1


User provided reference genes

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