Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 1.7e-131 472.6 229 100.0
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 2.2e-123 445.7 227 95.2
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 1.7e-120 436.0 241 89.6
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 8.7e-120 433.7 227 90.7
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 1.8e-112 409.5 210 91.4
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.4e-109 399.8 229 82.1
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 2.6e-108 395.6 228 81.6
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 5.8e-108 394.4 229 81.7
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 7.6e-108 394.0 226 81.0
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 2.2e-107 392.5 229 80.8
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 2.9e-107 392.1 229 82.5
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 1.1e-106 390.2 226 82.3
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 1.4e-106 389.8 229 81.2
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 5.5e-106 387.9 228 77.6
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.2e-105 386.7 226 80.5
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 1.6e-105 386.3 228 78.5
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 2.1e-105 386.0 229 80.3
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 3.5e-105 385.2 226 80.5
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 7.9e-105 384.0 229 79.9
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 1.3e-104 383.3 226 79.6
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 2.3e-104 382.5 229 77.7
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 2.3e-104 382.5 229 79.0
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 3.0e-104 382.1 229 79.5
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 8.7e-104 380.6 229 79.5
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 1.5e-103 379.8 229 77.7
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.5e-103 379.8 229 79.5
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.5e-103 379.8 229 77.7
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 2.5e-103 379.0 229 79.0
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 2.5e-103 379.0 226 78.3
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 5.6e-103 377.9 229 77.7
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 5.6e-103 377.9 229 77.3
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 9.6e-103 377.1 227 76.2
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 9.6e-103 377.1 227 79.7
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 1.6e-102 376.3 230 75.7
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.6e-102 376.3 229 76.4
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.6e-102 376.3 229 77.3
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 2.1e-102 375.9 229 76.4
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 2.1e-102 375.9 229 79.0
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.8e-102 375.6 227 75.8
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 2.8e-102 375.6 241 75.5
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 4.8e-102 374.8 227 75.8
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 6.2e-102 374.4 227 75.8
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.8e-101 372.9 229 75.1
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.8e-101 372.9 238 74.8
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 1.8e-101 372.9 229 76.0
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 3.1e-101 372.1 227 74.9
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 5.3e-101 371.3 254 72.4
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 9.0e-101 370.5 229 75.5
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 9.0e-101 370.5 228 77.2
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 9.0e-101 370.5 229 75.5
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 1.5e-100 369.8 229 75.1
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.5e-100 369.8 227 74.4
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.5e-100 369.8 227 74.4
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 2.0e-100 369.4 278 66.5
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 3.4e-100 368.6 228 76.3
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 7.6e-100 367.5 226 75.2
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 1.3e-99 366.7 234 73.9
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 1.3e-99 366.7 229 72.5
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 1.7e-99 366.3 227 77.1
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 6.5e-99 364.4 226 74.8
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 8.4e-99 364.0 227 75.3
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 1.1e-98 363.6 228 75.4
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 1.4e-98 363.2 244 71.3
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 2.5e-98 362.5 234 73.5
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 2.5e-98 362.5 234 73.5
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 3.2e-98 362.1 232 73.3
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 3.2e-98 362.1 228 71.9
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 4.2e-98 361.7 228 75.9
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 5.5e-98 361.3 228 75.0
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 7.1e-98 360.9 228 75.0
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 9.3e-98 360.5 229 73.4
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 2.1e-97 359.4 218 75.2
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 2.7e-97 359.0 228 75.0
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 4.6e-97 358.2 226 74.8
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 6.0e-97 357.8 226 75.7
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 1.0e-96 357.1 226 73.0
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 1.8e-96 356.3 228 75.0
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.3e-96 355.9 228 73.2
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 6.7e-96 354.4 230 72.6
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 1.5e-95 353.2 229 72.1
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 1.5e-95 353.2 226 72.6
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.9e-95 352.8 228 72.8
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 7.4e-95 350.9 228 73.2
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 4.1e-93 345.1 230 71.7
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 9.0e-93 344.0 211 76.3
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 1.2e-92 343.6 231 69.3
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 2.0e-92 342.8 207 76.3
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 3.4e-92 342.0 231 68.8
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.6e-89 333.2 209 73.7
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 3.1e-85 318.9 231 66.2
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 2.2e-83 312.8 226 65.0
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 1.0e-80 303.9 216 69.4
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.0e-75 287.3 265 57.0
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 3.2e-74 282.3 242 61.6
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 5.5e-74 281.6 170 79.4
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 1.2e-73 280.4 231 63.2
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 2.3e-72 276.2 167 80.2
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 2.0e-71 273.1 250 56.8
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 3.3e-71 272.3 161 79.5
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 2.8e-70 269.2 269 55.0
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 5.3e-69 265.0 167 73.1
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 3.2e-66 255.8 284 51.8
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 3.2e-66 255.8 284 51.8
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 5.2e-64 248.4 229 57.2
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 3.4e-63 245.7 142 78.2
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 4.4e-63 245.4 157 76.4
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 9.7e-63 244.2 154 76.0
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 9.7e-63 244.2 229 57.2
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 1.7e-62 243.4 229 55.5
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 7.7e-60 234.6 226 50.4
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 5.0e-59 231.9 142 72.5
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 2.7e-57 226.1 226 53.1
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 3.6e-57 225.7 137 75.9
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 2.8e-54 216.1 224 46.0
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 2.3e-51 206.5 228 43.0
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.1e-50 204.1 147 67.3
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 1.3e-46 190.7 120 71.7
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 1.0e-35 154.5 94 74.5
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 7.3e-34 148.3 197 39.6
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 3.1e-32 142.9 199 35.2
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 1.3e-30 137.5 157 51.6
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 1.7e-22 110.5 70 70.0
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 3.7e-22 109.4 94 59.6
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 7.1e-21 105.1 75 66.7
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 1.3e-19 100.9 265 25.7
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 9.6e-18 94.7 55 76.4
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 3.8e-14 82.8 204 27.0
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 5.6e-10 68.9 52 65.4
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 6.2e-09 65.5 194 27.3
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 6.2e-09 65.5 194 27.3
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 1.4e-08 64.3 194 26.8
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 1.4e-08 64.3 202 24.3
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 2.4e-08 63.5 167 29.3
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 4.0e-08 62.8 171 26.9
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 9.0e-08 61.6 185 28.1
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 9.0e-08 61.6 185 28.1
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 1.2e-07 61.2 185 28.1
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 1.2e-07 61.2 185 28.1
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 2.0e-07 60.5 185 28.1
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 2.6e-07 60.1 183 26.8
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 3.4e-07 59.7 199 26.6
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 3.4e-07 59.7 182 25.3
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 3.4e-07 59.7 183 25.1
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 5.8e-07 58.9 167 26.3
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 5.8e-07 58.9 185 28.1
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 7.6e-07 58.5 201 27.9
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 7.6e-07 58.5 195 28.2
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 7.6e-07 58.5 185 28.1
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 1.3e-06 57.8 154 29.2
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 1.3e-06 57.8 168 26.8
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 1.3e-06 57.8 188 26.6
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 1.3e-06 57.8 164 25.0
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 1.3e-06 57.8 153 26.1
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 1.7e-06 57.4 153 26.8
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 1.7e-06 57.4 153 26.8
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 1.7e-06 57.4 184 25.5
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 2.9e-06 56.6 183 26.2
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 2.9e-06 56.6 167 28.1
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 2.9e-06 56.6 153 26.1
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 2.9e-06 56.6 154 27.3
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 3.8e-06 56.2 185 25.4
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 4.9e-06 55.8 154 26.0
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 6.4e-06 55.5 185 27.0
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 6.4e-06 55.5 186 27.4
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 6.4e-06 55.5 184 26.6
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 8.4e-06 55.1 184 25.0
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 8.4e-06 55.1 163 26.4


User provided reference genes

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