Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 6.5e-143 510.8 267 100.0
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.0e-112 409.5 271 84.5
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 3.3e-110 402.1 271 82.7
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 5.6e-110 401.4 271 82.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.4e-97 359.4 257 77.4
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.7e-96 355.9 257 77.0
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 7.8e-96 354.4 251 76.1
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.2e-91 340.5 257 73.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 5.5e-65 251.9 248 59.3
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.4e-62 241.5 249 55.4
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.2e-59 234.2 253 57.3
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.0e-59 233.4 246 53.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.7e-58 230.3 247 57.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.7e-58 230.3 258 53.9
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 6.5e-58 228.4 205 61.5
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.5e-57 226.5 254 52.4
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.7e-56 223.0 253 52.2
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 3.5e-56 222.6 265 52.5
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 7.9e-56 221.5 252 51.6
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.8e-55 220.3 248 54.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.3e-55 219.9 250 54.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 5.1e-55 218.8 244 51.6
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 5.1e-55 218.8 248 54.4
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 9.6e-54 214.5 169 66.9
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.6e-53 213.8 249 51.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.6e-53 213.8 248 53.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.6e-53 213.8 249 51.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.1e-53 213.4 248 52.8
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 2.8e-53 213.0 246 51.6
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.8e-53 213.0 244 53.7
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.4e-52 210.7 232 53.9
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.4e-52 209.9 249 49.0
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.1e-52 209.5 253 49.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 3.1e-52 209.5 253 52.2
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 9.0e-52 208.0 253 51.4
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.2e-51 207.6 247 49.8
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.0e-51 206.8 251 50.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.6e-51 206.5 248 52.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 3.4e-51 206.1 246 50.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 3.4e-51 206.1 283 49.1
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.9e-51 205.3 259 49.0
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.0e-50 204.5 245 51.4
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.3e-50 204.1 246 50.8
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.3e-50 204.1 247 48.6
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.9e-50 203.0 241 51.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.9e-50 203.0 241 51.0
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-50 202.2 246 49.6
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 6.5e-50 201.8 248 50.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.5e-49 199.9 244 51.2
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.2e-49 199.1 236 51.7
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 7.2e-49 198.4 250 48.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 7.2e-49 198.4 250 48.4
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.2e-48 197.6 241 50.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.1e-48 196.8 245 48.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.1e-48 196.8 271 46.9
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.5e-48 196.1 241 50.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.5e-48 196.1 247 48.6
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.5e-48 196.1 167 62.9
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 4.6e-48 195.7 246 44.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 4.6e-48 195.7 236 50.4
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 7.9e-48 194.9 250 50.8
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.0e-47 194.5 248 47.6
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-47 194.1 247 49.8
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.0e-47 193.0 251 46.2
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 8.7e-47 191.4 242 47.5
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.9e-46 190.3 246 49.2
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.9e-46 190.3 248 48.8
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.3e-46 189.1 226 50.0
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 4.3e-46 189.1 259 48.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.3e-46 189.1 222 53.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-45 187.6 235 50.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-45 187.2 255 47.5
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.6e-45 187.2 182 53.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.2e-45 186.8 183 55.7
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 2.8e-45 186.4 246 48.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.8e-45 185.7 288 44.1
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 6.3e-45 185.3 249 45.0
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-44 184.5 255 47.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.1e-44 184.5 165 56.4
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.4e-44 184.1 195 55.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.8e-44 183.7 244 48.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 5.3e-44 182.2 242 44.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 5.3e-44 182.2 251 47.4
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-43 180.6 258 45.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 3.4e-43 179.5 262 46.6
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.5e-43 179.1 255 45.1
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 7.7e-43 178.3 248 45.6
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.3e-42 177.6 249 45.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.3e-42 177.6 263 45.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.3e-42 177.6 250 45.2
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-42 177.2 263 45.2
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.2e-42 176.8 245 49.4
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.8e-42 176.0 159 56.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 3.8e-42 176.0 230 46.5
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 6.5e-42 175.3 252 42.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.5e-42 174.9 263 44.5
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.1e-41 174.5 258 45.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.1e-41 174.5 261 43.7
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.9e-41 173.7 253 45.8
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 7.2e-41 171.8 252 46.0
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 7.2e-41 171.8 272 44.1
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.2e-41 171.8 366 35.8
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 7.9e-40 168.3 247 44.5
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.0e-39 167.9 145 60.0
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.0e-39 167.9 275 44.4
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.8e-39 167.2 253 45.1
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.8e-39 167.2 260 44.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.0e-39 166.4 251 43.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 3.0e-39 166.4 310 39.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.9e-39 166.0 256 42.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.9e-39 166.0 240 45.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 6.7e-39 165.2 257 43.2
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.1e-38 164.5 261 43.7
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.1e-38 164.5 261 43.7
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.0e-38 163.7 267 43.1
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 7.4e-38 161.8 257 42.0
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.3e-37 161.0 249 42.2
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.3e-37 161.0 271 41.7
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.8e-37 159.1 258 42.2
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 4.8e-37 159.1 233 40.8
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.2e-37 158.3 167 55.1
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.4e-35 152.9 250 42.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.4e-35 152.9 146 58.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.4e-35 152.9 362 34.8
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.4e-31 141.0 239 39.7
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 2.6e-27 126.7 291 35.7
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 7.7e-27 125.2 217 40.1
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.9e-25 120.6 70 84.3
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.9e-25 120.6 124 53.2
PGSC0003DMG400032808 Solanum tuberosum HOM05D004579 ORTHO05D005376 7.2e-25 118.6 91 78.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.6e-24 116.3 246 37.8
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 4.7e-24 115.9 237 35.0
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.5e-22 110.9 253 36.8
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 9.7e-22 108.2 143 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.8e-21 105.9 214 35.0
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.9e-19 99.0 125 48.0
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 7.7e-19 98.6 140 42.9
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.2e-18 97.1 123 52.8
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.2e-17 92.8 154 39.6
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 4.0e-15 86.3 182 38.5
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.2e-14 84.7 211 29.9
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 2.6e-14 83.6 101 45.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 9.8e-14 81.6 125 45.6
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 6.5e-10 68.9 116 43.1
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.5e-09 65.9 143 37.1
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 9.4e-09 65.1 43 65.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 9.4e-09 65.1 43 65.1
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 2.7e-08 63.5 71 46.5


User provided reference genes

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