Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1215.11 Capsicum annuum HOM05D008012 ORTHO05D010154 3.4e-68 261.5 133 100.0
Dinv42620 Davidia involucrata HOM05D008012 ORTHO05D010154 2.8e-22 109.0 132 46.2
Sopen07g015000 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-21 106.7 59 84.7
Cfa013683 Carpinus fangiana HOM05D008012 ORTHO05D010154 7.0e-21 104.4 133 47.4
CiPaw.07G166200 Carya illinoinensis HOM05D008012 ORTHO05D010154 9.1e-21 104.0 103 51.5
Prupe.1G530900 Prunus persica HOM05D008012 ORTHO05D010154 1.6e-20 103.2 132 44.7
Rhsim06G0072100 Rhododendron simsii HOM05D008012 ORTHO05D010154 2.0e-20 102.8 124 46.8
Hma1.2p1_0125F.1_g058940 Hydrangea macrophylla HOM05D008012 ORTHO05D010154 7.7e-20 100.9 114 47.4
RcHm_v2.0_Chr7g0236831 Rosa chinensis HOM05D008012 ORTHO05D010154 1.7e-19 99.8 108 48.1
vmacro21334 Vaccinium macrocarpon HOM05D008012 ORTHO05D010154 2.3e-19 99.4 120 46.7
Dinv44854 Davidia involucrata HOM05D008012 ORTHO05D010154 3.8e-19 98.6 132 43.9
Lj1g0025426 Lotus japonicus HOM05D008012 ORTHO05D010154 1.1e-18 97.1 133 42.9
MBI02_g32605_MAGBIO Magnolia biondii HOM05D008012 ORTHO05D010154 3.3e-18 95.5 99 47.5
Hund16860 Selenicereus undatus HOM05D008012 ORTHO05D010154 4.2e-18 95.1 98 49.0
TAR628G1418 Trochodendron aralioides HOM05D008012 ORTHO05D010154 2.1e-17 92.8 106 43.4
Ciclev10002397m.g Citrus clementina HOM05D008012 ORTHO05D010154 2.8e-17 92.4 89 50.6
AUR62019041 Chenopodium quinoa HOM05D008012 ORTHO05D010154 3.6e-17 92.0 126 39.7
CSS0008352 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 4.7e-17 91.7 106 46.2
Lalb_Chr23g0270051 Lupinus albus HOM05D008012 ORTHO05D010154 4.7e-17 91.7 96 50.0
Cpa.g.sc21.9 Carica papaya HOM05D008012 ORTHO05D010154 2.3e-16 89.4 111 43.2
Duzib093G0747 Durio zibethinus HOM05D008012 ORTHO05D010154 3.0e-16 89.0 121 43.0
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 3.0e-16 89.0 127 37.0
Eucgr.F02139 Eucalyptus grandis HOM05D008012 ORTHO05D010154 4.0e-16 88.6 118 44.1
Lalb_Chr11g0065041 Lupinus albus HOM05D008012 ORTHO05D010154 5.2e-16 88.2 129 39.5
Atru.chr13.1021 Acer truncatum HOM05D008012 ORTHO05D010154 6.8e-16 87.8 92 48.9
arahy.Tifrunner.gnm1.ann1.S7389H Arachis hypogaea HOM05D008012 ORTHO05D010154 6.8e-16 87.8 84 52.4
PGR031G3518 Punica granatum HOM05D052328 ORTHO05D010154 6.8e-16 87.8 133 36.1
GSVIVG01009167001 Vitis vinifera HOM05D008012 ORTHO05D010154 1.5e-15 86.7 132 40.9
FAN04G0544 Fragaria x ananassa HOM05D008012 ORTHO05D010154 2.0e-15 86.3 94 50.0
Glyma.04G091500 Glycine max HOM05D008012 ORTHO05D010154 2.6e-15 85.9 106 45.3
VMungo1309G2208 Vigna mungo HOM05D008012 ORTHO05D010154 3.4e-15 85.5 98 45.9
Glyma.06G093300 Glycine max HOM05D008012 ORTHO05D010154 5.7e-15 84.7 118 41.5
Gohir.A05G219900 Gossypium hirsutum HOM05D008012 ORTHO05D010154 5.7e-15 84.7 121 38.8
Gohir.D05G222500 Gossypium hirsutum HOM05D008012 ORTHO05D010154 5.7e-15 84.7 121 38.8
Gorai.009G229900 Gossypium raimondii HOM05D008012 ORTHO05D010154 5.7e-15 84.7 121 38.8
EL10Ac1g01062 Beta vulgaris HOM05D008012 ORTHO05D010154 7.5e-15 84.3 134 37.3
Aqoxy5G01307 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 1.3e-14 83.6 127 37.0
Phvul.009G144400 Phaseolus vulgaris HOM05D008012 ORTHO05D010154 1.3e-14 83.6 116 40.5
Thecc.08G070000 Theobroma cacao HOM05D008012 ORTHO05D010154 1.3e-14 83.6 115 40.9
Ca_15998_v3 Cicer arietinum L. HOM05D008012 ORTHO05D010154 2.2e-14 82.8 103 42.7
COL.COLO4_35233 Corchorus olitorius HOM05D008012 ORTHO05D010154 2.2e-14 82.8 92 45.7
FvH4_5g35450 Fragaria vesca HOM05D008012 ORTHO05D010154 6.3e-14 81.3 94 48.9
FAN08G2109 Fragaria x ananassa HOM05D008012 ORTHO05D010154 6.3e-14 81.3 94 48.9
FAN18G1410 Fragaria x ananassa HOM05D008012 ORTHO05D010154 6.3e-14 81.3 94 48.9
QL09p017632 Quercus lobata HOM05D008012 ORTHO05D010154 8.3e-14 80.9 129 37.2
ECA232G0711 Erigeron canadensis HOM05D008012 ORTHO05D010154 1.4e-13 80.1 126 39.7
PSO017G0519 Papaver somniferum HOM05D008012 ORTHO05D010154 1.4e-13 80.1 96 41.7
CANSAT25G2577 Cannabis sativa HOM05D008012 ORTHO05D010154 1.8e-13 79.7 134 36.6
TPR.G26063 Trifolium pratense HOM05D008012 ORTHO05D010154 1.8e-13 79.7 93 44.1
Aqoxy6G01439 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 2.4e-13 79.3 103 37.9
Lsat_1_v5_gn_9_75360 Lactuca sativa HOM05D008012 ORTHO05D010154 9.2e-13 77.4 103 41.7
HanXRQChr12g0378041 Helianthus annuus HOM05D008012 ORTHO05D010154 1.2e-12 77.0 115 41.7
Psat5g046360 Pisum sativum HOM05D008012 ORTHO05D010154 1.6e-12 76.6 103 44.7
Zm00001eb038310 Zea mays HOM05D008012 ORTHO05D010154 2.7e-12 75.9 114 41.2
Manes.18G059880 Manihot esculenta HOM05D008012 ORTHO05D010154 3.5e-12 75.5 98 43.9
Nn5g29899 Nelumbo nucifera HOM05D008012 ORTHO05D010154 1.3e-11 73.6 102 42.2
HanXRQChr12g0378051 Helianthus annuus HOM05D008012 ORTHO05D010154 1.7e-11 73.2 133 36.8
CDE04G1170 Ceratophyllum demersum HOM05D008012 ORTHO05D010154 2.9e-11 72.4 86 41.9
TWI56G1079 Tripterygium wilfordii HOM05D008012 ORTHO05D010154 1.1e-10 70.5 121 38.0
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 5.6e-10 68.2 79 48.1
Medtr3g100460 Medicago truncatula HOM05D008012 ORTHO05D010154 2.8e-09 65.9 83 43.4
ATR0665G245 Amborella trichopoda HOM05D008012 ORTHO05D010154 4.0e-08 62.0 101 37.6
Os08g0477800 Oryza sativa ssp. japonica HOM05D008012 ORTHO05D010154 4.0e-08 62.0 126 28.6
Potri.005G156500 Populus trichocarpa HOM05D008012 ORTHO05D010154 3.4e-07 58.9 134 33.6
CSS0015058 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 3.7e-06 55.5 73 46.6


User provided reference genes

Program Settings