Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1214.9 Capsicum annuum HOM05D001448 ORTHO05D007650 4.6e-36 154.1 80 100.0
Nitab4.5_0000183g0110 Nicotiana tabacum HOM05D001448 ORTHO05D007650 3.6e-12 74.7 48 77.1
Nitab4.5_0001639g0080 Nicotiana tabacum HOM05D001448 ORTHO05D007650 1.4e-11 72.8 48 75.0
Peaxi162Scf00445g00511 Petunia axillaris HOM05D001448 ORTHO05D007650 3.3e-10 68.2 48 70.8
Solyc08g074740.3 Solanum lycopersicum HOM05D001448 ORTHO05D007650 3.3e-10 68.2 48 68.8
PGSC0003DMG401030070 Solanum tuberosum HOM05D001448 ORTHO05D007650 3.3e-10 68.2 48 68.8
Sopen08g023340 Solanum pennellii HOM05D001448 ORTHO05D007650 4.4e-10 67.8 48 68.8
BcaB01g02445 Brassica carinata HOM05D001448 ORTHO05D007650 5.7e-10 67.4 48 68.8
BcaC01g06762 Brassica carinata HOM05D001448 ORTHO05D007650 5.7e-10 67.4 48 68.8
A03p31090 Brassica napus HOM05D001448 ORTHO05D007650 5.7e-10 67.4 48 68.8
C03p37900 Brassica napus HOM05D001448 ORTHO05D007650 5.7e-10 67.4 48 68.8
BolC3t16078H Brassica oleracea HOM05D001448 ORTHO05D007650 5.7e-10 67.4 48 68.8
BraA03t12286Z Brassica rapa HOM05D001448 ORTHO05D007650 5.7e-10 67.4 48 68.8
CAN.G1214.7 Capsicum annuum HOM05D001448 ORTHO05D007650 7.5e-10 67.0 48 70.8
Thhalv10028509m.g Eutrema salsugineum HOM05D001448 ORTHO05D007650 7.5e-10 67.0 48 68.8
Sp6g02270 Schrenkiella parvula HOM05D001448 ORTHO05D007650 9.7e-10 66.6 48 68.8
CARHR250580 Cardamine hirsuta HOM05D001448 ORTHO05D007650 1.3e-09 66.2 48 68.8
AL6G50730 Arabidopsis lyrata HOM05D001448 ORTHO05D007650 3.7e-09 64.7 48 66.7
AT4G02390 Arabidopsis thaliana HOM05D001448 ORTHO05D007650 3.7e-09 64.7 48 66.7
Carub.0006s3477 Capsella rubella HOM05D001448 ORTHO05D007650 6.3e-09 63.9 48 66.7
MBI18_g45178_MAGBIO Magnolia biondii HOM05D001448 ORTHO05D007650 8.2e-09 63.5 48 66.7
Os01g0351200 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D007650 1.4e-08 62.8 48 64.6
Aa31LG5G2030 Aethionema arabicum HOM05D001448 ORTHO05D007650 1.8e-08 62.4 48 64.6
Solyc08g074730.2 Solanum lycopersicum HOM05D001448 ORTHO05D007650 1.8e-08 62.4 48 66.7
Zm00001eb341090 Zea mays HOM05D001448 ORTHO05D007650 1.8e-08 62.4 48 64.6
CsaV3_7G029320 Cucumis sativus L. HOM05D001448 ORTHO05D007650 2.4e-08 62.0 48 66.7
TAR636G2196 Trochodendron aralioides HOM05D001448 ORTHO05D007650 2.4e-08 62.0 48 64.6
CSS0005794 Camellia sinensis var. sinensis HOM05D001448 ORTHO05D007650 4.1e-08 61.2 48 64.6
QL12p028362 Quercus lobata HOM05D001448 ORTHO05D007650 4.1e-08 61.2 48 64.6
Sed0003234 Sechium edule HOM05D001448 ORTHO05D007650 4.1e-08 61.2 48 64.6
THA.LOC104801277 Tarenaya hassleriana HOM05D001448 ORTHO05D007650 4.1e-08 61.2 48 64.6
Cpa.g.sc9.254 Carica papaya HOM05D001448 ORTHO05D007650 5.3e-08 60.8 48 62.5
Nn3g21510 Nelumbo nucifera HOM05D001448 ORTHO05D007650 5.3e-08 60.8 48 62.5
vmacro02445 Vaccinium macrocarpon HOM05D001448 ORTHO05D007650 5.3e-08 60.8 48 62.5
Glyma.10G017700 Glycine max HOM05D001448 ORTHO05D007650 7.0e-08 60.5 48 60.4
PSO170G4471 Papaver somniferum HOM05D001448 ORTHO05D007650 7.0e-08 60.5 48 62.5
arahy.Tifrunner.gnm1.ann1.US6JKM Arachis hypogaea HOM05D001448 ORTHO05D007650 9.1e-08 60.1 48 62.5
CiPaw.07G110000 Carya illinoinensis HOM05D001448 ORTHO05D007650 9.1e-08 60.1 48 62.5
Haze_04948 Corylus avellana HOM05D001448 ORTHO05D007650 9.1e-08 60.1 48 64.6
Lj5g0009959 Lotus japonicus HOM05D001448 ORTHO05D007650 9.1e-08 60.1 48 62.5
MD03G1289600 Malus domestica HOM05D001448 ORTHO05D007650 9.1e-08 60.1 48 62.5
PGSC0003DMG402030070 Solanum tuberosum HOM05D001448 ORTHO05D007650 9.1e-08 60.1 48 64.6
BcaC03g16118 Brassica carinata HOM05D001448 ORTHO05D007650 1.2e-07 59.7 48 60.4
C02p38910 Brassica napus HOM05D001448 ORTHO05D007650 1.2e-07 59.7 48 60.4
BolC2t09904H Brassica oleracea HOM05D001448 ORTHO05D007650 1.2e-07 59.7 48 60.4
Manes.01G220000 Manihot esculenta HOM05D001448 ORTHO05D007650 1.2e-07 59.7 48 62.5
Psat6g164760 Pisum sativum HOM05D001448 ORTHO05D007650 1.2e-07 59.7 48 60.4
Rhsim13G0009500 Rhododendron simsii HOM05D001448 ORTHO05D007650 1.2e-07 59.7 48 62.5
Actinidia21205 Actinidia chinensis HOM05D001448 ORTHO05D007650 1.6e-07 59.3 48 62.5
EL10Ac7g17524 Beta vulgaris HOM05D001448 ORTHO05D007650 1.6e-07 59.3 48 60.4
MELO3C015996.2 Cucumis melo HOM05D001448 ORTHO05D007650 1.6e-07 59.3 48 64.6
Medtr1g088375 Medicago truncatula HOM05D001448 ORTHO05D007650 1.6e-07 59.3 48 60.4
Oeu046674.1 Olea europaea HOM05D001448 ORTHO05D007650 1.6e-07 59.3 48 62.5
Sc18g0004000 Simmondsia chinensis HOM05D001448 ORTHO05D007650 1.6e-07 59.3 48 62.5
A02p24650 Brassica napus HOM05D001448 ORTHO05D007650 2.0e-07 58.9 48 60.4
Ca_10328_v3 Cicer arietinum L. HOM05D001448 ORTHO05D007650 2.0e-07 58.9 48 60.4
Ciclev10019312m.g Citrus clementina HOM05D001448 ORTHO05D007650 2.0e-07 58.9 48 62.5
Cc01_g20930 Coffea canephora HOM05D001448 ORTHO05D007650 2.0e-07 58.9 48 62.5
Eucgr.H01106 Eucalyptus grandis HOM05D001448 ORTHO05D007650 2.0e-07 58.9 48 62.5
arahy.Tifrunner.gnm1.ann1.1TW9IR Arachis hypogaea HOM05D001448 ORTHO05D007650 2.7e-07 58.5 48 60.4
AUR62008678 Chenopodium quinoa HOM05D001448 ORTHO05D007650 2.7e-07 58.5 48 60.4
AUR62025568 Chenopodium quinoa HOM05D001448 ORTHO05D007650 2.7e-07 58.5 48 60.4
Phvul.007G218800 Phaseolus vulgaris HOM05D001448 ORTHO05D007650 2.7e-07 58.5 48 60.4
TPR.G34005 Trifolium pratense HOM05D001448 ORTHO05D007650 2.7e-07 58.5 48 60.4
TWI59G1163 Tripterygium wilfordii HOM05D001448 ORTHO05D007650 2.7e-07 58.5 48 62.5
Atru.chr5.1138 Acer truncatum HOM05D001448 ORTHO05D007650 3.5e-07 58.2 48 62.5
ATR0706G118 Amborella trichopoda HOM05D001448 ORTHO05D007650 3.5e-07 58.2 48 60.4
Potri.014G128200 Populus trichocarpa HOM05D001448 ORTHO05D007650 3.5e-07 58.2 48 62.5
FvH4_2g25840 Fragaria vesca HOM05D001448 ORTHO05D007650 4.5e-07 57.8 48 60.4
FAN20G2072 Fragaria x ananassa HOM05D001448 ORTHO05D007650 4.5e-07 57.8 48 60.4
FAN24G0272 Fragaria x ananassa HOM05D001448 ORTHO05D007650 4.5e-07 57.8 48 60.4
FAN27G0114 Fragaria x ananassa HOM05D001448 ORTHO05D007650 4.5e-07 57.8 48 60.4
Lalb_Chr06g0166511 Lupinus albus HOM05D001448 ORTHO05D007650 5.9e-07 57.4 48 62.5
VMungo0720G1165 Vigna mungo HOM05D001448 ORTHO05D007650 5.9e-07 57.4 48 58.3
BraA02t07456Z Brassica rapa HOM05D001448 ORTHO05D007650 7.7e-07 57.0 48 58.3
Dinv19684 Davidia involucrata HOM05D001448 ORTHO05D007650 7.7e-07 57.0 48 58.3
ECA248G3972 Erigeron canadensis HOM05D001448 ORTHO05D007650 7.7e-07 57.0 48 62.5
HanXRQChr01g0001321 Helianthus annuus HOM05D001448 ORTHO05D007650 7.7e-07 57.0 48 60.4
FAN15G1191 Fragaria x ananassa HOM05D001448 ORTHO05D007650 1.0e-06 56.6 47 59.6
MD03G1289400 Malus domestica HOM05D001448 ORTHO05D007650 1.0e-06 56.6 48 58.3
Mapoly0074s0022 Marchantia polymorpha HOM05D001448 ORTHO05D007650 1.0e-06 56.6 44 61.4
Sabra14G0095100 Salix brachista HOM05D001448 ORTHO05D007650 1.0e-06 56.6 48 62.5
CDE02G4502 Ceratophyllum demersum HOM05D001448 ORTHO05D007650 1.3e-06 56.2 47 59.6
Prupe.8G262600 Prunus persica HOM05D001448 ORTHO05D007650 1.3e-06 56.2 48 60.4
RcHm_v2.0_Chr6g0294171 Rosa chinensis HOM05D001448 ORTHO05D007650 1.3e-06 56.2 48 58.3
Hund05432 Selenicereus undatus HOM05D001448 ORTHO05D007650 1.3e-06 56.2 48 58.3
Hma1.2p1_0491F.1_g164660 Hydrangea macrophylla HOM05D001448 ORTHO05D007650 1.7e-06 55.8 48 58.3
Os01g0351100 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D007650 2.2e-06 55.5 48 58.3
Lsat_1_v5_gn_5_190980 Lactuca sativa HOM05D001448 ORTHO05D007650 2.9e-06 55.1 48 60.4
SalBow3G2153 Salvia bowleyana HOM05D001448 ORTHO05D007650 2.9e-06 55.1 48 58.3
SEGI_28497 Sequoiadendron giganteum HOM05D001448 ORTHO05D007650 2.9e-06 55.1 49 59.2
DCAR_012388 Daucus carota HOM05D001448 ORTHO05D007650 3.8e-06 54.7 48 56.2
PGR119G0994 Punica granatum HOM05D001448 ORTHO05D007650 5.0e-06 54.3 48 62.5
TAR636G0525 Trochodendron aralioides HOM05D001448 ORTHO05D007650 5.0e-06 54.3 48 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1274 Anthoceros agrestis HOM05D001448 ORTHO05D007650 6.5e-06 53.9 48 54.2
Sed0021740 Sechium edule HOM05D001448 ORTHO05D007650 6.5e-06 53.9 48 56.2
Medtr1g088400 Medicago truncatula HOM05D001448 ORTHO05D007650 8.5e-06 53.5 48 54.2
Pp3c22_13240 Physcomitrium patens HOM05D001448 ORTHO05D007650 8.5e-06 53.5 48 58.3
SMO353G0427 Selaginella moellendorffii HOM05D001448 ORTHO05D007650 8.5e-06 53.5 48 54.2


User provided reference genes

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