Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1214.8 Capsicum annuum HOM05D000340 ORTHO05D020112 3.9e-54 214.5 108 100.0
CAN.G497.21 Capsicum annuum HOM05D000340 ORTHO05D000821 6.9e-35 150.6 89 86.5
CAN.G969.4 Capsicum annuum HOM05D000340 ORTHO05D020112 6.9e-35 150.6 87 87.4
Nitab4.5_0005206g0010 Nicotiana tabacum HOM05D000340 ORTHO05D000821 2.2e-33 145.6 89 82.0
Nitab4.5_0001952g0140 Nicotiana tabacum HOM05D000340 ORTHO05D000821 5.0e-33 144.4 89 82.0
Solyc02g089640.3 Solanum lycopersicum HOM05D000340 ORTHO05D000821 5.9e-26 120.9 89 75.3
Sopen02g034370 Solanum pennellii HOM05D000340 ORTHO05D000821 5.9e-26 120.9 89 75.3
PGSC0003DMG400010049 Solanum tuberosum HOM05D000340 ORTHO05D000821 5.9e-26 120.9 89 75.3
Peaxi162Scf00129g00836 Petunia axillaris HOM05D000340 ORTHO05D000821 1.7e-25 119.4 87 73.6
CAN.G101.21 Capsicum annuum HOM05D001456 ORTHO05D020112 6.9e-19 97.4 60 83.3
CAN.G237.9 Capsicum annuum HOM05D000340 ORTHO05D020112 1.5e-18 96.3 67 74.6
Cc01_g05870 Coffea canephora HOM05D000340 ORTHO05D000821 5.9e-18 94.4 91 57.1
Lju41C32T2 Lonicera japonica HOM05D000340 ORTHO05D000821 8.5e-17 90.5 89 53.9
MSTRG.3189 Avicennia marina HOM05D000340 ORTHO05D000821 2.7e-15 85.5 89 50.6
Migut.H00151 Erythranthe guttata HOM05D000340 ORTHO05D000821 2.7e-15 85.5 88 50.0
Dinv33522 Davidia involucrata HOM05D000340 ORTHO05D000821 3.6e-15 85.1 88 54.5
MSTRG.15503 Avicennia marina HOM05D000340 ORTHO05D000821 8.0e-15 84.0 89 50.6
SalBow7G3474 Salvia bowleyana HOM05D000340 ORTHO05D000821 8.0e-15 84.0 90 50.0
CiPaw.03G035400 Carya illinoinensis HOM05D000340 ORTHO05D000821 1.0e-14 83.6 99 47.5
CiPaw.04G022800 Carya illinoinensis HOM05D000340 ORTHO05D000821 1.8e-14 82.8 99 47.5
Gohir.D09G024200 Gossypium hirsutum HOM05D000340 ORTHO05D000821 2.3e-14 82.4 87 50.6
GSVIVG01032523001 Vitis vinifera HOM05D000340 ORTHO05D000821 2.3e-14 82.4 88 46.6
Lj7C409T17 Lonicera japonica HOM05D000340 ORTHO05D000821 6.7e-14 80.9 88 48.9
Manes.15G180336 Manihot esculenta HOM05D000340 ORTHO05D000821 6.7e-14 80.9 88 46.6
SalBow1G1654 Salvia bowleyana HOM05D000340 ORTHO05D000821 6.7e-14 80.9 90 46.7
Manes.17G124500 Manihot esculenta HOM05D000340 ORTHO05D000821 8.8e-14 80.5 88 46.6
Lsat_1_v5_gn_4_181860 Lactuca sativa HOM05D000340 ORTHO05D000821 1.1e-13 80.1 87 48.3
QL02p077683 Quercus lobata HOM05D000340 ORTHO05D000821 1.1e-13 80.1 88 48.9
Haze_14634 Corylus avellana HOM05D000340 ORTHO05D000821 2.0e-13 79.3 88 51.1
Dinv35033 Davidia involucrata HOM05D000340 ORTHO05D000821 2.0e-13 79.3 88 53.4
Gohir.A09G024900 Gossypium hirsutum HOM05D000340 ORTHO05D000821 3.3e-13 78.6 87 48.3
Gorai.006G028400 Gossypium raimondii HOM05D000340 ORTHO05D000821 3.3e-13 78.6 87 48.3
Thecc.04G004600 Theobroma cacao HOM05D000340 ORTHO05D000821 3.3e-13 78.6 87 49.4
Cfa007461 Carpinus fangiana HOM05D000340 ORTHO05D000821 4.4e-13 78.2 88 50.0
DCAR_013973 Daucus carota HOM05D000340 ORTHO05D000821 7.4e-13 77.4 89 44.9
Prupe.3G280100 Prunus persica HOM05D000340 ORTHO05D000821 9.7e-13 77.0 88 47.7
Ciclev10014531m.g Citrus clementina HOM05D000340 ORTHO05D000821 1.3e-12 76.6 91 48.4
MD17G1038900 Malus domestica HOM05D000340 ORTHO05D000821 2.2e-12 75.9 88 50.0
Duzib147G0226 Durio zibethinus HOM05D000340 ORTHO05D000821 3.7e-12 75.1 87 48.3
Duzib264G0604 Durio zibethinus HOM05D000340 ORTHO05D000821 4.8e-12 74.7 87 47.1
Cpa.g.sc286.3 Carica papaya HOM05D000340 ORTHO05D000821 6.3e-12 74.3 90 46.7
HanXRQChr09g0266011 Helianthus annuus HOM05D000340 ORTHO05D000821 1.1e-11 73.6 87 46.0
VMungo0464G0723 Vigna mungo HOM05D000340 ORTHO05D000821 1.8e-11 72.8 90 44.4
COL.COLO4_32005 Corchorus olitorius HOM05D000340 ORTHO05D000821 3.1e-11 72.0 82 46.3
DCAR_011199 Daucus carota HOM05D000340 ORTHO05D000821 4.1e-11 71.6 88 47.7
Hma1.2p1_0967F.1_g242420 Hydrangea macrophylla HOM05D000340 ORTHO05D000821 4.1e-11 71.6 89 47.2
THA.LOC104825299 Tarenaya hassleriana HOM05D000340 ORTHO05D000821 4.1e-11 71.6 95 43.2
HanXRQChr15g0488371 Helianthus annuus HOM05D000340 ORTHO05D000821 5.3e-11 71.2 87 42.5
Lsat_1_v5_gn_0_3541 Lactuca sativa HOM05D000340 ORTHO05D000821 7.0e-11 70.9 83 49.4
MD09G1037900 Malus domestica HOM05D000340 ORTHO05D000821 7.0e-11 70.9 88 47.7
CAN.G85.11 Capsicum annuum HOM05D001456 ORTHO05D020112 9.1e-11 70.5 73 53.4
Sed0019649 Sechium edule HOM05D000340 ORTHO05D000821 1.6e-10 69.7 97 42.3
Actinidia06037 Actinidia chinensis HOM05D000340 ORTHO05D000821 2.0e-10 69.3 92 46.7
Glyma.19G012700 Glycine max HOM05D000340 ORTHO05D000821 2.0e-10 69.3 96 40.6
HanXRQChr17g0548061 Helianthus annuus HOM05D000340 ORTHO05D000821 2.6e-10 68.9 87 41.4
Nn3g16967 Nelumbo nucifera HOM05D000340 ORTHO05D000821 2.6e-10 68.9 91 44.0
ClCG00G005670 Citrullus lanatus HOM05D000340 ORTHO05D000821 3.5e-10 68.6 89 46.1
ClCG09G018680 Citrullus lanatus HOM05D000340 ORTHO05D000821 3.5e-10 68.6 89 46.1
ClCG09G018750 Citrullus lanatus HOM05D000340 ORTHO05D000821 3.5e-10 68.6 89 46.1
Lalb_Chr06g0176421 Lupinus albus HOM05D000340 ORTHO05D000821 3.5e-10 68.6 90 44.4
CANSAT64G0811 Cannabis sativa HOM05D000340 ORTHO05D000821 4.5e-10 68.2 87 43.7
CANSAT64G1253 Cannabis sativa HOM05D000340 ORTHO05D000821 4.5e-10 68.2 87 43.7
Glyma.13G070300 Glycine max HOM05D000340 ORTHO05D000821 5.9e-10 67.8 91 41.8
AL5G17670 Arabidopsis lyrata HOM05D000340 ORTHO05D000821 7.7e-10 67.4 94 41.5
SGA_v2.0_scaffold205G41721 Striga asiatica HOM05D000340 ORTHO05D000821 7.7e-10 67.4 111 38.7
unitig_21.g20500 Utricularia gibba HOM05D000340 ORTHO05D000821 7.7e-10 67.4 90 41.1
CARHR149800 Cardamine hirsuta HOM05D000340 ORTHO05D000821 1.0e-09 67.0 94 40.4
TPR.G2313 Trifolium pratense HOM05D000340 ORTHO05D000821 1.0e-09 67.0 86 40.7
unitig_744.g24351 Utricularia gibba HOM05D000340 ORTHO05D000821 1.0e-09 67.0 90 42.2
Atru.chr6.2168 Acer truncatum HOM05D000340 ORTHO05D000821 1.3e-09 66.6 89 42.7
TWI56G1412 Tripterygium wilfordii HOM05D000340 ORTHO05D000821 1.3e-09 66.6 92 42.4
Oeu062372.2 Olea europaea HOM05D000340 ORTHO05D000821 1.7e-09 66.2 65 50.8
TWI12G1037 Tripterygium wilfordii HOM05D000340 ORTHO05D000821 2.2e-09 65.9 89 41.6
CsaV3_5G037390 Cucumis sativus L. HOM05D000340 ORTHO05D000821 2.9e-09 65.5 89 44.9
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 3.8e-09 65.1 87 41.4
PGR142G3715 Punica granatum HOM05D000340 ORTHO05D000821 3.8e-09 65.1 90 36.7
SGA_v2.0_scaffold135G34840 Striga asiatica HOM05D000340 ORTHO05D000821 3.8e-09 65.1 111 38.7
Lj2g0026476 Lotus japonicus HOM05D000340 ORTHO05D000821 5.0e-09 64.7 90 42.2
Phvul.004G019600 Phaseolus vulgaris HOM05D000340 ORTHO05D000821 5.0e-09 64.7 90 40.0
arahy.Tifrunner.gnm1.ann1.UI6D1P Arachis hypogaea HOM05D000340 ORTHO05D000821 6.5e-09 64.3 104 36.5
MELO3C021517.2 Cucumis melo HOM05D000340 ORTHO05D000821 6.5e-09 64.3 89 43.8
ECA232G0824 Erigeron canadensis HOM05D000340 ORTHO05D000821 6.5e-09 64.3 96 42.7
Eucgr.I01833 Eucalyptus grandis HOM05D000340 ORTHO05D000821 6.5e-09 64.3 94 41.5
Lalb_Chr02g0159751 Lupinus albus HOM05D000340 ORTHO05D000821 6.5e-09 64.3 86 41.9
Sed0027810 Sechium edule HOM05D000340 ORTHO05D000821 6.5e-09 64.3 88 43.2
Ca_04217_v3 Cicer arietinum L. HOM05D000340 ORTHO05D000821 8.5e-09 63.9 76 43.4
Lj3g0021505 Lotus japonicus HOM05D000340 ORTHO05D000821 1.1e-08 63.5 88 46.6
CSS0006307 Camellia sinensis var. sinensis HOM05D000340 ORTHO05D000821 1.5e-08 63.2 88 45.5
CSS0045171 Camellia sinensis var. sinensis HOM05D000340 ORTHO05D000821 1.5e-08 63.2 88 45.5
arahy.Tifrunner.gnm1.ann1.T8CSYB Arachis hypogaea HOM05D000340 ORTHO05D000821 2.5e-08 62.4 104 35.6
Psat1g060240 Pisum sativum HOM05D000340 ORTHO05D000821 3.2e-08 62.0 86 37.2
SMO367G1129 Selaginella moellendorffii HOM05D000340 ORTHO05D000821 4.2e-08 61.6 88 35.2
CDE02G3284 Ceratophyllum demersum HOM05D000340 ORTHO05D000821 5.5e-08 61.2 81 43.2
CDE05G2210 Ceratophyllum demersum HOM05D000340 ORTHO05D000821 7.2e-08 60.8 81 43.2
FvH4_6g52870 Fragaria vesca HOM05D000340 ORTHO05D000821 7.2e-08 60.8 94 38.3
FAN02G2449 Fragaria x ananassa HOM05D000340 ORTHO05D000821 7.2e-08 60.8 94 38.3
RcHm_v2.0_Chr2g0174571 Rosa chinensis HOM05D000340 ORTHO05D000821 7.2e-08 60.8 96 36.5
FAN05G2591 Fragaria x ananassa HOM05D000340 ORTHO05D000821 9.4e-08 60.5 81 42.0
FAN05G1618 Fragaria x ananassa HOM05D000340 ORTHO05D000821 1.2e-07 60.1 94 37.2
FAN09G4574 Fragaria x ananassa HOM05D000340 ORTHO05D000821 1.6e-07 59.7 81 42.0
FAN14G5391 Fragaria x ananassa HOM05D000340 ORTHO05D000821 1.6e-07 59.7 94 37.2
FAN14G0043 Fragaria x ananassa HOM05D000340 ORTHO05D000821 2.1e-07 59.3 81 42.0
CSS0042822 Camellia sinensis var. sinensis HOM05D000340 ORTHO05D000821 2.7e-07 58.9 88 42.0
C02p54680 Brassica napus HOM05D000340 ORTHO05D000821 3.6e-07 58.5 95 37.9
Actinidia00636 Actinidia chinensis HOM05D000340 ORTHO05D000821 4.7e-07 58.2 72 47.2
Actinidia31137 Actinidia chinensis HOM05D000340 ORTHO05D000821 4.7e-07 58.2 72 47.2
FAN02G3491 Fragaria x ananassa HOM05D000340 ORTHO05D000821 4.7e-07 58.2 83 41.0
RcHm_v2.0_Chr2g0150131 Rosa chinensis HOM05D000340 ORTHO05D000821 4.7e-07 58.2 81 40.7
FvH4_6g37310 Fragaria vesca HOM05D000340 ORTHO05D000821 6.1e-07 57.8 81 40.7
HanXRQChr15g0474431 Helianthus annuus HOM05D000340 ORTHO05D000821 6.1e-07 57.8 78 42.3
CDE04G2399 Ceratophyllum demersum HOM05D000340 ORTHO05D000821 8.0e-07 57.4 72 47.2
Medtr6g007807 Medicago truncatula HOM05D000340 ORTHO05D000821 8.0e-07 57.4 88 37.5
Nn8g40281 Nelumbo nucifera HOM05D000340 ORTHO05D000821 8.0e-07 57.4 88 43.2
Zm00001eb412710 Zea mays HOM05D000340 ORTHO05D000821 8.0e-07 57.4 89 37.1
FvH4_6g52850 Fragaria vesca HOM05D000340 ORTHO05D000821 1.0e-06 57.0 92 37.0
Hma1.2p1_2931F.1_g330510 Hydrangea macrophylla HOM05D000340 ORTHO05D020112 1.0e-06 57.0 56 57.1
CDE02G4650 Ceratophyllum demersum HOM05D000340 ORTHO05D000821 1.4e-06 56.6 72 45.8
Glyma.07G003800 Glycine max HOM05D000340 ORTHO05D000821 1.4e-06 56.6 79 43.0
Prupe.3G167200 Prunus persica HOM05D000340 ORTHO05D000821 1.4e-06 56.6 73 42.5
Aqoxy3G03073 Aquilegia oxysepala HOM05D000340 ORTHO05D000821 1.8e-06 56.2 82 35.4
Psat7g263600 Pisum sativum HOM05D000340 ORTHO05D000821 1.8e-06 56.2 86 43.0
Aqoxy7G03191 Aquilegia oxysepala HOM05D000340 ORTHO05D000821 2.3e-06 55.8 73 46.6
Mapoly0030s0087 Marchantia polymorpha HOM05D000340 ORTHO05D000821 2.3e-06 55.8 72 44.4
Nn2g12599 Nelumbo nucifera HOM05D000340 ORTHO05D000821 2.3e-06 55.8 72 45.8
Rhsim12G0214200 Rhododendron simsii HOM05D000340 ORTHO05D000821 2.3e-06 55.8 73 45.2
vmacro17062 Vaccinium macrocarpon HOM05D000340 ORTHO05D000821 2.3e-06 55.8 73 45.2
Pp3c18_10540 Physcomitrium patens HOM05D000340 ORTHO05D000821 3.0e-06 55.5 97 34.0
Hund05686 Selenicereus undatus HOM05D000340 ORTHO05D000821 3.0e-06 55.5 88 38.6
Ah.15g094700 Amaranthus hybridus HOM05D000340 ORTHO05D000821 4.0e-06 55.1 86 38.4
PSO063G0184 Papaver somniferum HOM05D000340 ORTHO05D000821 4.0e-06 55.1 88 40.9
SEGI_02551 Sequoiadendron giganteum HOM05D000340 ORTHO05D000821 4.0e-06 55.1 71 43.7
VMungo0647G1907 Vigna mungo HOM05D000340 ORTHO05D000821 4.0e-06 55.1 79 45.6
MD17G1144800 Malus domestica HOM05D000340 ORTHO05D000821 5.2e-06 54.7 81 39.5
Rhsim10G0026200 Rhododendron simsii HOM05D000340 ORTHO05D000821 5.2e-06 54.7 92 39.1
SEGI_06172 Sequoiadendron giganteum HOM05D000340 ORTHO05D000821 5.2e-06 54.7 87 33.3
TPR.G12336 Trifolium pratense HOM05D000340 ORTHO05D000821 5.2e-06 54.7 72 44.4
Dinv20357 Davidia involucrata HOM05D000340 ORTHO05D000821 6.7e-06 54.3 71 40.8
Lalb_Chr23g0269191 Lupinus albus HOM05D000340 ORTHO05D000821 6.7e-06 54.3 92 39.1
MBI15_g26080_MAGBIO Magnolia biondii HOM05D000340 ORTHO05D000821 6.7e-06 54.3 72 43.1
Zm00001eb170830 Zea mays HOM05D000340 ORTHO05D000821 6.7e-06 54.3 87 35.6
Atru.chr7.2612 Acer truncatum HOM05D000340 ORTHO05D000821 8.8e-06 53.9 72 43.1
Cfa013293 Carpinus fangiana HOM05D000340 ORTHO05D000821 8.8e-06 53.9 92 38.0
Lj1g0024875 Lotus japonicus HOM05D000340 ORTHO05D000821 8.8e-06 53.9 72 43.1
MBI14_g30705_MAGBIO Magnolia biondii HOM05D000340 ORTHO05D000821 8.8e-06 53.9 72 45.8
Phvul.008G255800 Phaseolus vulgaris HOM05D000340 ORTHO05D000821 8.8e-06 53.9 79 44.3


User provided reference genes

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