Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 8.1e-129 463.8 238 100.0
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 9.0e-120 433.7 233 93.1
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 5.8e-119 431.0 233 91.8
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 3.8e-118 428.3 233 91.0
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 4.8e-113 411.4 233 88.4
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.2e-111 406.8 233 87.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 2.9e-110 402.1 233 85.4
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.5e-93 345.9 232 73.7
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 6.7e-91 337.8 228 73.7
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 8.8e-91 337.4 228 73.7
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 9.7e-90 334.0 231 74.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 6.3e-89 331.3 229 74.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 7.7e-87 324.3 233 69.5
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.6e-84 316.6 225 70.7
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 3.6e-84 315.5 234 69.2
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 7.5e-82 307.8 227 70.5
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.1e-80 302.0 227 65.6
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 7.0e-80 301.2 226 69.0
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 2.0e-79 299.7 227 68.3
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.0e-78 297.4 234 65.8
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.7e-78 296.6 227 65.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.8e-78 295.4 226 66.8
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.1e-77 293.9 227 65.2
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.1e-77 293.9 227 65.2
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.2e-77 292.0 229 65.1
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 5.5e-77 291.6 227 64.8
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.2e-76 290.4 227 64.8
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.2e-76 290.4 227 64.3
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.6e-76 288.9 227 65.6
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.0e-75 287.3 231 63.6
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.0e-75 287.3 226 65.0
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.4e-75 287.0 226 65.0
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.8e-75 286.6 227 65.2
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 6.8e-75 284.6 231 63.6
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 6.8e-75 284.6 228 63.6
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 8.8e-75 284.3 228 63.6
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-74 283.9 227 63.9
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.0e-74 283.1 227 63.9
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.0e-74 283.1 227 65.2
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.0e-74 283.1 227 65.2
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 3.4e-74 282.3 227 63.9
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.4e-74 282.3 226 64.2
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.3e-73 280.4 217 66.8
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 2.2e-73 279.6 236 63.6
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 2.2e-73 279.6 309 50.5
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.8e-73 279.3 230 63.9
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 4.8e-73 278.5 228 64.0
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 4.8e-73 278.5 229 64.2
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.4e-72 276.2 242 63.2
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.1e-72 275.8 226 64.2
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.1e-72 275.4 225 64.4
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 4.1e-72 275.4 229 63.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.1e-72 275.4 229 62.4
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 7.0e-72 274.6 229 64.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.2e-71 273.9 227 64.8
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-71 272.7 225 62.7
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 3.5e-71 272.3 228 63.6
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 3.5e-71 272.3 227 63.4
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 7.7e-71 271.2 232 64.2
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.3e-70 270.4 232 64.2
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 2.3e-70 269.6 187 72.2
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.3e-70 269.6 231 59.7
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.8e-70 268.9 208 65.9
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-69 267.3 230 62.2
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.5e-69 266.9 237 58.6
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.5e-69 266.2 218 63.8
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.5e-69 265.0 229 61.6
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.2e-68 263.8 230 63.5
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 2.1e-68 263.1 232 62.9
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 3.6e-68 262.3 227 59.0
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 3.6e-68 262.3 226 61.9
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.7e-68 261.9 249 59.0
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 4.7e-68 261.9 199 65.3
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 4.7e-68 261.9 227 59.0
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 4.7e-68 261.9 230 60.0
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 4.7e-68 261.9 228 62.3
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 6.1e-68 261.5 231 62.8
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.8e-67 260.0 228 59.2
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.8e-67 258.1 256 56.2
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 6.8e-67 258.1 229 59.8
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.0e-66 256.5 224 61.6
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 2.6e-66 256.1 231 60.6
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 3.4e-66 255.8 261 54.4
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.4e-66 255.8 278 51.8
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 6.3e-65 251.5 223 61.4
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 6.3e-65 251.5 204 61.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 8.3e-65 251.1 231 61.0
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 8.3e-65 251.1 226 60.2
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.8e-64 250.0 231 58.4
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 5.4e-64 248.4 219 62.1
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 2.0e-63 246.5 226 60.2
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.7e-63 246.1 178 67.4
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.3e-62 243.8 197 62.9
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.3e-62 243.8 181 69.1
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 8.6e-62 241.1 228 60.5
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 8.6e-62 241.1 200 60.5
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.1e-61 240.7 232 59.9
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.9e-61 240.0 230 60.0
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 3.3e-61 239.2 227 60.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 3.3e-61 239.2 227 59.9
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 3.3e-61 239.2 227 60.4
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-60 236.9 228 59.6
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.8e-60 236.1 225 59.6
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.6e-60 235.7 226 59.3
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.7e-60 235.3 233 54.5
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.8e-59 233.4 231 54.5
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 2.3e-59 233.0 226 58.4
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.1e-59 232.6 216 59.3
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 5.2e-59 231.9 228 58.8
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.2e-58 230.7 230 54.8
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.5e-58 230.3 229 58.5
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 7.5e-58 228.0 228 57.0
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.7e-57 226.9 227 57.7
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 8.3e-57 224.6 227 53.3
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 8.3e-57 224.6 227 53.3
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.2e-56 222.6 173 65.3
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.1e-56 222.2 224 54.9
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 4.1e-56 222.2 229 54.6
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.6e-55 218.8 139 79.1
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.8e-55 218.0 231 53.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.0e-54 217.6 231 53.2
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.3e-54 217.2 248 52.0
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 5.0e-54 215.3 181 65.7
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 8.6e-54 214.5 218 55.0
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-53 213.4 155 70.3
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 2.3e-51 206.5 234 52.6
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.9e-51 204.5 168 62.5
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 9.8e-50 201.1 213 53.5
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.3e-49 200.7 222 52.3
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.3e-49 200.7 225 50.2
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 8.3e-49 198.0 153 68.6
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 7.8e-47 191.4 226 50.9
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.3e-46 190.7 222 49.5
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-44 183.7 183 58.5
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 6.2e-44 181.8 210 52.9
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.3e-41 174.1 150 61.3
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.3e-41 174.1 205 49.8
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 4.6e-39 165.6 128 66.4
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.0e-38 162.9 187 50.3
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.3e-37 159.5 99 79.8
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 6.8e-35 151.8 110 69.1
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.6e-31 140.6 180 50.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.6e-31 140.6 131 57.3
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.1e-31 140.2 100 66.0
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.8e-31 138.3 130 56.9
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.1e-29 134.4 131 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 9.6e-29 131.3 100 64.0
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.0e-26 123.6 130 51.5
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.7e-22 110.5 80 70.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.4e-19 100.9 68 76.5
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.4e-16 90.9 95 55.8
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.4e-16 90.9 95 55.8
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.3e-14 83.6 62 66.1
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 3.0e-14 83.2 64 68.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.5e-13 80.9 117 36.8
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 3.3e-13 79.7 105 40.0
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.3e-13 79.3 94 40.4
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 4.6e-07 59.3 71 40.8


User provided reference genes

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