Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G120.3 Capsicum annuum HOM05D005293 ORTHO05D006764 1.2e-39 166.0 83 100.0
CAN.G1076.24 Capsicum annuum HOM05D005293 ORTHO05D006764 2.1e-15 85.5 96 52.1
Solyc01g100650.3 Solanum lycopersicum HOM05D005293 ORTHO05D006764 1.0e-14 83.2 96 51.0
Nitab4.5_0004525g0070 Nicotiana tabacum HOM05D005293 ORTHO05D006764 6.8e-14 80.5 97 51.5
Nitab4.5_0001338g0090 Nicotiana tabacum HOM05D005293 ORTHO05D006764 1.2e-13 79.7 97 50.5
Peaxi162Scf01061g00134 Petunia axillaris HOM05D005293 ORTHO05D006764 3.4e-13 78.2 96 47.9
CSS0034972 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 3.7e-12 74.7 97 44.3
MSTRG.27933 Avicennia marina HOM05D005293 ORTHO05D006764 2.4e-11 72.0 95 44.2
ECA232G4555 Erigeron canadensis HOM05D005293 ORTHO05D006764 3.1e-11 71.6 91 48.4
CSS0026167 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 4.1e-11 71.2 95 43.2
Cc02_g35200 Coffea canephora HOM05D005293 ORTHO05D006764 4.1e-11 71.2 96 42.7
HanXRQChr09g0258691 Helianthus annuus HOM05D005293 ORTHO05D006764 7.0e-11 70.5 91 47.3
Sabra13G0006700 Salix brachista HOM05D005293 ORTHO05D006764 2.0e-10 68.9 95 43.2
GSVIVG01031253001 Vitis vinifera HOM05D005293 ORTHO05D006764 2.0e-10 68.9 91 46.2
Dinv30900 Davidia involucrata HOM05D005293 ORTHO05D006764 3.5e-10 68.2 95 42.1
Potri.013G007800 Populus trichocarpa HOM05D005293 ORTHO05D006764 3.5e-10 68.2 95 43.2
Ciclev10000268m.g Citrus clementina HOM05D005293 ORTHO05D006764 4.5e-10 67.8 95 43.2
Hma1.2p1_0008F-1.1_g005500 Hydrangea macrophylla HOM05D005293 ORTHO05D006764 7.7e-10 67.0 92 43.5
CiPaw.07G030400 Carya illinoinensis HOM05D005293 ORTHO05D006764 1.0e-09 66.6 95 42.1
Lj5C327G4 Lonicera japonica HOM05D005293 ORTHO05D006764 1.0e-09 66.6 91 42.9
PGR031G3792 Punica granatum HOM05D005293 ORTHO05D006764 1.3e-09 66.2 93 44.1
Atru.chr2.352 Acer truncatum HOM05D005293 ORTHO05D006764 1.7e-09 65.9 94 40.4
Actinidia16868 Actinidia chinensis HOM05D005293 ORTHO05D006764 1.7e-09 65.9 95 41.1
Prupe.6G311900 Prunus persica HOM05D005293 ORTHO05D006764 2.2e-09 65.5 95 41.1
Haze_04033 Corylus avellana HOM05D005293 ORTHO05D006764 2.9e-09 65.1 95 41.1
Migut.N00939 Erythranthe guttata HOM05D005293 ORTHO05D006764 3.8e-09 64.7 95 43.2
Manes.09G177500 Manihot esculenta HOM05D005293 ORTHO05D006764 3.8e-09 64.7 95 41.1
Nn3g21747 Nelumbo nucifera HOM05D005293 ORTHO05D006764 3.8e-09 64.7 92 42.4
Cfa006727 Carpinus fangiana HOM05D005293 ORTHO05D006764 5.0e-09 64.3 95 41.1
CANSAT54G1875 Cannabis sativa HOM05D005293 ORTHO05D006764 6.5e-09 63.9 95 41.1
Eucgr.H03302 Eucalyptus grandis HOM05D005293 ORTHO05D006764 8.5e-09 63.5 92 40.2
MBI19_g03258_MAGBIO Magnolia biondii HOM05D005293 ORTHO05D006764 8.5e-09 63.5 94 41.5
Cpa.g.sc48.172 Carica papaya HOM05D005293 ORTHO05D006764 1.1e-08 63.2 92 42.4
PSO478G4822 Papaver somniferum HOM05D005293 ORTHO05D006764 1.1e-08 63.2 93 44.1
PSO782G5414 Papaver somniferum HOM05D005293 ORTHO05D006764 1.1e-08 63.2 93 44.1
Sc16g0009090 Simmondsia chinensis HOM05D005293 ORTHO05D006764 1.1e-08 63.2 95 40.0
TWI56G0054 Tripterygium wilfordii HOM05D005293 ORTHO05D006764 1.1e-08 63.2 95 38.9
Oeu016565.1 Olea europaea HOM05D005293 ORTHO05D006764 1.5e-08 62.8 93 41.9
QL03p014223 Quercus lobata HOM05D005293 ORTHO05D006764 1.5e-08 62.8 95 40.0
MD12G1204700 Malus domestica HOM05D005293 ORTHO05D006764 1.9e-08 62.4 92 43.5
AUR62000381 Chenopodium quinoa HOM05D005293 ORTHO05D006764 2.5e-08 62.0 95 38.9
Aqoxy7G02580 Aquilegia oxysepala HOM05D005293 ORTHO05D006764 3.2e-08 61.6 93 41.9
unitig_746.g26883 Utricularia gibba HOM05D005293 ORTHO05D006764 3.2e-08 61.6 95 40.0
ClCG03G017750 Citrullus lanatus HOM05D005293 ORTHO05D006764 4.2e-08 61.2 95 40.0
MELO3C015255.2 Cucumis melo HOM05D005293 ORTHO05D006764 4.2e-08 61.2 95 40.0
CsaV3_1G037900 Cucumis sativus L. HOM05D005293 ORTHO05D006764 4.2e-08 61.2 95 40.0
Gohir.A13G112600 Gossypium hirsutum HOM05D005293 ORTHO05D006764 4.2e-08 61.2 91 39.6
Gohir.D13G115500 Gossypium hirsutum HOM05D005293 ORTHO05D006764 4.2e-08 61.2 91 39.6
Gorai.013G130100 Gossypium raimondii HOM05D005293 ORTHO05D006764 4.2e-08 61.2 91 39.6
arahy.Tifrunner.gnm1.ann1.BVXC9K Arachis hypogaea HOM05D005293 ORTHO05D006764 9.4e-08 60.1 97 39.2
Os03g0311300 Oryza sativa ssp. japonica HOM05D005293 ORTHO05D006764 9.4e-08 60.1 98 41.8
THA.LOC104820617 Tarenaya hassleriana HOM05D005293 ORTHO05D006764 9.4e-08 60.1 93 40.9
TAR362G0639 Trochodendron aralioides HOM05D005293 ORTHO05D006764 1.2e-07 59.7 97 40.2
Ah.06g196020 Amaranthus hybridus HOM05D005293 ORTHO05D006764 2.1e-07 58.9 95 36.8
FAN09G2780 Fragaria x ananassa HOM05D005293 ORTHO05D006764 2.1e-07 58.9 95 37.9
Sed0019289 Sechium edule HOM05D005293 ORTHO05D006764 2.1e-07 58.9 95 40.0
Thecc.05G324300 Theobroma cacao HOM05D005293 ORTHO05D006764 2.1e-07 58.9 91 39.6
BolC9t55314H Brassica oleracea HOM05D005293 ORTHO05D006764 2.7e-07 58.5 96 41.7
Carub.0002s0755 Capsella rubella HOM05D005293 ORTHO05D006764 2.7e-07 58.5 93 40.9
DCAR_029342 Daucus carota HOM05D005293 ORTHO05D006764 2.7e-07 58.5 91 39.6
FvH4_6g07620 Fragaria vesca HOM05D005293 ORTHO05D006764 2.7e-07 58.5 95 36.8
FAN05G3958 Fragaria x ananassa HOM05D005293 ORTHO05D006764 2.7e-07 58.5 95 36.8
FAN14G3496 Fragaria x ananassa HOM05D005293 ORTHO05D006764 2.7e-07 58.5 95 36.8
RcHm_v2.0_Chr3g0457281 Rosa chinensis HOM05D005293 ORTHO05D006764 2.7e-07 58.5 95 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2939 Anthoceros agrestis HOM05D005293 ORTHO05D006764 3.6e-07 58.2 88 42.0
A09p19050 Brassica napus HOM05D005293 ORTHO05D006764 4.7e-07 57.8 93 41.9
EL10Ac4g09472 Beta vulgaris HOM05D005293 ORTHO05D006764 6.1e-07 57.4 95 36.8
Aa31LG2G11430 Aethionema arabicum HOM05D005293 ORTHO05D006764 8.0e-07 57.0 93 39.8
BcaB07g31127 Brassica carinata HOM05D005293 ORTHO05D006764 8.0e-07 57.0 93 41.9
BcaC04g22064 Brassica carinata HOM05D005293 ORTHO05D006764 8.0e-07 57.0 93 41.9
C09p23880 Brassica napus HOM05D005293 ORTHO05D006764 8.0e-07 57.0 93 41.9
BraA09t37523Z Brassica rapa HOM05D005293 ORTHO05D006764 8.0e-07 57.0 93 41.9
AUR62006736 Chenopodium quinoa HOM05D005293 ORTHO05D006764 8.0e-07 57.0 91 38.5
COL.COLO4_05541 Corchorus olitorius HOM05D005293 ORTHO05D006764 8.0e-07 57.0 91 38.5
Thhalv10023228m.g Eutrema salsugineum HOM05D005293 ORTHO05D006764 8.0e-07 57.0 93 40.9
HPP92_013515 Vanilla planifolia HOM05D005293 ORTHO05D006764 8.0e-07 57.0 90 37.8
AL1G66250 Arabidopsis lyrata HOM05D005293 ORTHO05D006764 1.0e-06 56.6 93 40.9
AT1G56500 Arabidopsis thaliana HOM05D005293 ORTHO05D006764 1.0e-06 56.6 93 40.9
CARHR055040 Cardamine hirsuta HOM05D005293 ORTHO05D006764 1.0e-06 56.6 93 40.9
Duzib106G1789 Durio zibethinus HOM05D005293 ORTHO05D006764 1.0e-06 56.6 91 37.4
Zm00001eb014950 Zea mays HOM05D005293 ORTHO05D006764 1.0e-06 56.6 93 39.8
Zm00001eb014960 Zea mays HOM05D005293 ORTHO05D006764 1.0e-06 56.6 93 39.8
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.4e-06 56.2 96 38.5
Glyma.03G230900 Glycine max HOM05D005293 ORTHO05D006764 1.8e-06 55.8 91 37.4
Lalb_Chr04g0260421 Lupinus albus HOM05D005293 ORTHO05D006764 1.8e-06 55.8 91 37.4
Psat3g012680 Pisum sativum HOM05D005293 ORTHO05D006764 2.3e-06 55.5 91 37.4
Sp2g06270 Schrenkiella parvula HOM05D005293 ORTHO05D006764 2.3e-06 55.5 93 40.9
Ca_09301_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 3.0e-06 55.1 91 36.3
Phvul.001G224700 Phaseolus vulgaris HOM05D005293 ORTHO05D006764 4.0e-06 54.7 91 36.3
Glyma.19G228100 Glycine max HOM05D005293 ORTHO05D006764 5.2e-06 54.3 91 37.4
Lj1g0018442 Lotus japonicus HOM05D005293 ORTHO05D006764 5.2e-06 54.3 95 33.7
Hund21867 Selenicereus undatus HOM05D005293 ORTHO05D006764 5.2e-06 54.3 95 33.7


User provided reference genes

Program Settings