Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1195.6 Capsicum annuum HOM05D001042 ORTHO05D016882 1.0e-89 334.0 254 100.0
CAN.G899.8 Capsicum annuum HOM05D001042 ORTHO05D016882 8.0e-50 201.4 253 76.3
CAN.G630.31 Capsicum annuum HOM05D001042 ORTHO05D006654 1.1e-46 191.0 202 86.1
Solyc08g079740.3 Solanum lycopersicum HOM05D001042 ORTHO05D006654 3.6e-42 176.0 113 79.6
Sopen08g028100 Solanum pennellii HOM05D001042 ORTHO05D006654 3.6e-42 176.0 113 79.6
PGSC0003DMG400003945 Solanum tuberosum HOM05D001042 ORTHO05D006654 1.5e-40 170.6 113 78.8
CAN.G1740.5 Capsicum annuum HOM05D001042 ORTHO05D016882 4.1e-38 162.5 253 45.1
Nitab4.5_0000439g0030 Nicotiana tabacum HOM05D001042 ORTHO05D006654 1.7e-36 157.1 113 75.2
CAN.G276.14 Capsicum annuum HOM05D001042 ORTHO05D016882 5.1e-36 155.6 253 45.1
Nitab4.5_0007509g0010 Nicotiana tabacum HOM05D001042 ORTHO05D006654 1.5e-35 154.1 113 73.5
Peaxi162Scf00620g00014 Petunia axillaris HOM05D001042 ORTHO05D006654 4.3e-35 152.5 113 74.3
Oeu056806.1 Olea europaea HOM05D001042 ORTHO05D006654 1.1e-33 147.9 113 75.2
Cc08_g13530 Coffea canephora HOM05D001042 ORTHO05D006654 5.8e-32 142.1 112 67.0
CSS0030594 Camellia sinensis var. sinensis HOM05D001042 ORTHO05D006654 2.9e-31 139.8 108 68.5
CSS0026819 Camellia sinensis var. sinensis HOM05D001042 ORTHO05D006654 3.8e-31 139.4 108 68.5
MSTRG.1922 Avicennia marina HOM05D001042 ORTHO05D006654 6.4e-31 138.7 111 67.6
ECA233G0194 Erigeron canadensis HOM05D001042 ORTHO05D006654 4.1e-30 136.0 111 70.3
HanXRQChr09g0246761 Helianthus annuus HOM05D001042 ORTHO05D006654 4.1e-30 136.0 109 66.1
CSS0043559 Camellia sinensis var. sinensis HOM05D001042 ORTHO05D006654 9.2e-30 134.8 110 65.5
Ciclev10018802m.g Citrus clementina HOM05D001042 ORTHO05D006654 1.2e-29 134.4 113 67.3
Dinv39053 Davidia involucrata HOM05D001042 ORTHO05D006654 1.6e-29 134.0 113 66.4
Rhsim08G0202700 Rhododendron simsii HOM05D001042 ORTHO05D006654 6.0e-29 132.1 108 66.7
Atru.chr9.1476 Acer truncatum HOM05D001042 ORTHO05D006654 2.3e-28 130.2 105 70.5
Oeu048310.1 Olea europaea HOM05D001042 ORTHO05D016882 3.9e-28 129.4 113 65.5
Nn4g26439 Nelumbo nucifera HOM05D001042 ORTHO05D006654 8.6e-28 128.3 112 62.5
arahy.Tifrunner.gnm1.ann1.C29XKN Arachis hypogaea HOM05D001042 ORTHO05D006654 1.1e-27 127.9 116 62.9
GSVIVG01005456001 Vitis vinifera HOM05D001042 ORTHO05D006654 1.1e-27 127.9 110 65.5
Dinv37737 Davidia involucrata HOM05D001042 ORTHO05D006654 1.5e-27 127.5 113 63.7
arahy.Tifrunner.gnm1.ann1.YXI3SW Arachis hypogaea HOM05D001042 ORTHO05D006654 1.9e-27 127.1 116 62.9
CAN.G1215.6 Capsicum annuum HOM05D001042 ORTHO05D016882 1.9e-27 127.1 113 61.9
DCAR_000879 Daucus carota HOM05D001042 ORTHO05D006654 2.5e-27 126.7 113 64.6
Oeu040243.1 Olea europaea HOM05D001042 ORTHO05D006654 3.3e-27 126.3 113 63.7
SalBow6G1925 Salvia bowleyana HOM05D001042 ORTHO05D006654 3.3e-27 126.3 113 61.9
Ca_06678_v3 Cicer arietinum L. HOM05D001042 ORTHO05D006654 4.3e-27 125.9 116 60.3
PGR031G2828 Punica granatum HOM05D001042 ORTHO05D006654 5.6e-27 125.6 116 61.2
Lj2g0001484 Lotus japonicus HOM05D001042 ORTHO05D006654 9.6e-27 124.8 116 59.5
VMungo1215G0381 Vigna mungo HOM05D001042 ORTHO05D006654 1.2e-26 124.4 115 60.0
Actinidia02069 Actinidia chinensis HOM05D001042 ORTHO05D006654 2.1e-26 123.6 109 60.6
CANSAT35G1341 Cannabis sativa HOM05D001042 ORTHO05D006654 2.1e-26 123.6 114 61.4
Potri.001G114500 Populus trichocarpa HOM05D001042 ORTHO05D006654 2.1e-26 123.6 116 59.5
Sabra03G0081900 Salix brachista HOM05D001042 ORTHO05D006654 2.8e-26 123.2 116 59.5
vmacro19076 Vaccinium macrocarpon HOM05D001042 ORTHO05D006654 2.8e-26 123.2 108 64.8
CiPaw.11G144900 Carya illinoinensis HOM05D001042 ORTHO05D006654 3.6e-26 122.9 111 64.0
Migut.E01013 Erythranthe guttata HOM05D001042 ORTHO05D006654 6.2e-26 122.1 120 58.3
Potri.003G117500 Populus trichocarpa HOM05D001042 ORTHO05D006654 6.2e-26 122.1 116 59.5
COL.COLO4_23831 Corchorus olitorius HOM05D001042 ORTHO05D006654 1.1e-25 121.3 112 61.6
Eucgr.D01962 Eucalyptus grandis HOM05D001042 ORTHO05D006654 1.4e-25 120.9 109 62.4
Glyma.01G213600 Glycine max HOM05D001042 ORTHO05D006654 1.4e-25 120.9 114 60.5
TWI81G0854 Tripterygium wilfordii HOM05D001042 ORTHO05D006654 1.4e-25 120.9 117 61.5
Haze_09022 Corylus avellana HOM05D001042 ORTHO05D006654 1.8e-25 120.6 109 63.3
Haze_09027 Corylus avellana HOM05D001042 ORTHO05D006654 1.8e-25 120.6 109 63.3
QL12p015831 Quercus lobata HOM05D001042 ORTHO05D006654 1.8e-25 120.6 112 62.5
Gohir.A12G222700 Gossypium hirsutum HOM05D001042 ORTHO05D006654 2.4e-25 120.2 112 61.6
SGA_v2.0_scaffold196G40927 Striga asiatica HOM05D001042 ORTHO05D006654 2.4e-25 120.2 112 61.6
Duzib205G0877 Durio zibethinus HOM05D001042 ORTHO05D006654 3.1e-25 119.8 114 61.4
Duzib068G0598 Durio zibethinus HOM05D001042 ORTHO05D006654 5.2e-25 119.0 112 61.6
Gohir.D12G225250 Gossypium hirsutum HOM05D001042 ORTHO05D006654 5.2e-25 119.0 112 61.6
Gorai.008G241300 Gossypium raimondii HOM05D001042 ORTHO05D006654 5.2e-25 119.0 112 61.6
MBI12_g34481_MAGBIO Magnolia biondii HOM05D001042 ORTHO05D006654 5.2e-25 119.0 116 56.9
Cfa012045 Carpinus fangiana HOM05D001042 ORTHO05D006654 6.9e-25 118.6 111 61.3
Manes.02G031600 Manihot esculenta HOM05D001042 ORTHO05D006654 6.9e-25 118.6 115 58.3
Thecc.03G264900 Theobroma cacao HOM05D001042 ORTHO05D006654 6.9e-25 118.6 114 59.6
Ah.12g058000 Amaranthus hybridus HOM05D001042 ORTHO05D006654 8.9e-25 118.2 197 70.1
CsaV3_3G003360 Cucumis sativus L. HOM05D001042 ORTHO05D006654 8.9e-25 118.2 117 60.7
Sabra01G0087600 Salix brachista HOM05D001042 ORTHO05D006654 8.9e-25 118.2 112 58.9
Glyma.11G028300 Glycine max HOM05D001042 ORTHO05D006654 1.2e-24 117.9 114 58.8
Phvul.002G152100 Phaseolus vulgaris HOM05D001042 ORTHO05D006654 1.5e-24 117.5 115 59.1
Prupe.5G083400 Prunus persica HOM05D001042 ORTHO05D006654 1.5e-24 117.5 114 58.8
TAR375G1040 Trochodendron aralioides HOM05D001042 ORTHO05D006654 1.5e-24 117.5 113 60.2
Gohir.D08G193800 Gossypium hirsutum HOM05D001042 ORTHO05D006654 2.6e-24 116.7 114 59.6
Gorai.004G204100 Gossypium raimondii HOM05D001042 ORTHO05D006654 7.6e-24 115.2 114 59.6
Medtr5g011410 Medicago truncatula HOM05D001042 ORTHO05D006654 7.6e-24 115.2 117 58.1
CAN.G643.16 Capsicum annuum HOM05D001042 ORTHO05D016882 9.9e-24 114.8 81 75.3
MELO3C014002.2 Cucumis melo HOM05D001042 ORTHO05D006654 9.9e-24 114.8 117 59.8
ClCG00G000080 Citrullus lanatus HOM05D001042 ORTHO05D006654 1.7e-23 114.0 115 59.1
Aqoxy7G00580 Aquilegia oxysepala HOM05D001042 ORTHO05D006654 2.9e-23 113.2 111 55.9
CiPaw.12G102700 Carya illinoinensis HOM05D001042 ORTHO05D006654 3.8e-23 112.8 113 57.5
Gohir.A08G175200 Gossypium hirsutum HOM05D001042 ORTHO05D006654 4.9e-23 112.5 114 57.9
MD00G1072100 Malus domestica HOM05D001042 ORTHO05D006654 4.9e-23 112.5 113 58.4
TPR.G19596 Trifolium pratense HOM05D001042 ORTHO05D006654 4.9e-23 112.5 119 56.3
FvH4_5g00970 Fragaria vesca HOM05D001042 ORTHO05D006654 8.4e-23 111.7 113 56.6
FAN13G1992 Fragaria x ananassa HOM05D001042 ORTHO05D006654 8.4e-23 111.7 113 56.6
FAN18G4263 Fragaria x ananassa HOM05D001042 ORTHO05D006654 8.4e-23 111.7 113 56.6
Sc01g0009050 Simmondsia chinensis HOM05D001042 ORTHO05D006654 8.4e-23 111.7 113 54.9
MD04G1076300 Malus domestica HOM05D001042 ORTHO05D006654 1.4e-22 110.9 114 57.0
HPP92_014430 Vanilla planifolia HOM05D001042 ORTHO05D006654 1.4e-22 110.9 110 55.5
FAN08G0900 Fragaria x ananassa HOM05D001042 ORTHO05D006654 1.9e-22 110.5 113 55.8
FAN16G0135 Fragaria x ananassa HOM05D001042 ORTHO05D016882 1.9e-22 110.5 113 55.8
FAN26G3380 Fragaria x ananassa HOM05D001042 ORTHO05D006654 1.9e-22 110.5 113 55.8
Hund11553 Selenicereus undatus HOM05D001042 ORTHO05D006654 1.9e-22 110.5 112 58.9
Cpa.g.sc29.57 Carica papaya HOM05D001042 ORTHO05D006654 3.2e-22 109.8 116 52.6
Psat2g180600 Pisum sativum HOM05D001042 ORTHO05D006654 3.2e-22 109.8 117 54.7
AUR62010539 Chenopodium quinoa HOM05D001042 ORTHO05D006654 5.4e-22 109.0 112 55.4
AUR62017356 Chenopodium quinoa HOM05D001042 ORTHO05D006654 5.4e-22 109.0 112 55.4
FAN04G0829 Fragaria x ananassa HOM05D001042 ORTHO05D006654 3.5e-21 106.3 113 54.9
TAR374G0347 Trochodendron aralioides HOM05D001042 ORTHO05D006654 3.5e-21 106.3 115 57.4
RcHm_v2.0_Chr7g0200411 Rosa chinensis HOM05D001042 ORTHO05D006654 4.6e-21 105.9 113 54.0
DCAR_006791 Daucus carota HOM05D001042 ORTHO05D006654 7.8e-21 105.1 115 59.1
Lsat_1_v5_gn_6_8501 Lactuca sativa HOM05D001042 ORTHO05D006654 7.8e-21 105.1 110 52.7
HPP92_026200 Vanilla planifolia HOM05D001042 ORTHO05D006654 1.0e-20 104.8 113 52.2
ATR0757G001 Amborella trichopoda HOM05D001042 ORTHO05D006654 3.9e-20 102.8 113 54.9
Lalb_Chr09g0324611 Lupinus albus HOM05D001042 ORTHO05D006654 1.1e-19 101.3 118 51.7
Lalb_Chr16g0379891 Lupinus albus HOM05D001042 ORTHO05D006654 1.1e-19 101.3 118 54.2
Sed0001037 Sechium edule HOM05D001042 ORTHO05D006654 4.3e-19 99.4 116 55.2
Sp1g11060 Schrenkiella parvula HOM05D001042 ORTHO05D006654 9.6e-19 98.2 115 51.3
CDE12G0379 Ceratophyllum demersum HOM05D001042 ORTHO05D006654 3.6e-18 96.3 112 48.2
SEGI_06312 Sequoiadendron giganteum HOM05D001042 ORTHO05D006654 9.0e-17 91.7 118 49.2
EL10Ac5g12657 Beta vulgaris HOM05D001042 ORTHO05D006654 1.5e-16 90.9 112 50.9
CDE04G2090 Ceratophyllum demersum HOM05D001042 ORTHO05D006654 3.4e-16 89.7 112 47.3
Zm00001eb002030 Zea mays HOM05D001042 ORTHO05D006654 1.3e-15 87.8 116 45.7
Zm00001eb403550 Zea mays HOM05D001042 ORTHO05D006654 2.2e-15 87.0 117 46.2
Os03g0127700 Oryza sativa ssp. japonica HOM05D001042 ORTHO05D006654 6.4e-15 85.5 120 45.8
PSO478G1886 Papaver somniferum HOM05D001042 ORTHO05D006654 6.4e-15 85.5 112 49.1
PSO782G2030 Papaver somniferum HOM05D001042 ORTHO05D006654 6.4e-15 85.5 112 49.1
A06p09170 Brassica napus HOM05D001042 ORTHO05D006654 1.6e-13 80.9 121 47.9
BraA06t24103Z Brassica rapa HOM05D001042 ORTHO05D006654 1.6e-13 80.9 121 47.9
Oeu040242.1 Olea europaea HOM05D001042 ORTHO05D006654 1.8e-12 77.4 113 46.0
CAN.G78.60 Capsicum annuum HOM05D001042 ORTHO05D016882 3.0e-12 76.6 46 84.8
CAN.G531.2 Capsicum annuum HOM05D001042 ORTHO05D115086 3.9e-12 76.3 75 64.0
Pp3c5_8630 Physcomitrium patens HOM05D001042 ORTHO05D006654 1.5e-11 74.3 113 40.7
AagrBONN_evm.TU.Sc2ySwM_228.4110 Anthoceros agrestis HOM05D001042 ORTHO05D006654 5.6e-11 72.4 118 39.0
BcaC05g25188 Brassica carinata HOM05D001042 ORTHO05D006654 7.4e-11 72.0 118 44.1
C05p10750 Brassica napus HOM05D001042 ORTHO05D006654 7.4e-11 72.0 118 44.1
BolC5t29816H Brassica oleracea HOM05D001042 ORTHO05D006654 1.3e-10 71.2 117 44.4
Mapoly0013s0136 Marchantia polymorpha HOM05D001042 ORTHO05D006654 1.6e-10 70.9 126 38.1
AT1G12460 Arabidopsis thaliana HOM05D001042 ORTHO05D006654 6.2e-10 68.9 114 40.4
THA.LOC104818306 Tarenaya hassleriana HOM05D001042 ORTHO05D006654 6.2e-10 68.9 113 38.9
AL1G23810 Arabidopsis lyrata HOM05D001042 ORTHO05D006654 1.1e-09 68.2 111 41.4
Pp3c6_14960 Physcomitrium patens HOM05D001042 ORTHO05D006654 1.8e-09 67.4 115 37.4
Carub.0001s1216 Capsella rubella HOM05D001042 ORTHO05D006654 2.0e-08 63.9 111 38.7
SMO259G0026 Selaginella moellendorffii HOM05D001042 ORTHO05D006654 2.0e-08 63.9 123 35.8
Os10g0531700 Oryza sativa ssp. japonica HOM05D001042 ORTHO05D006654 3.4e-08 63.2 118 37.3
Aa31LG2G420 Aethionema arabicum HOM05D001042 ORTHO05D006654 4.5e-08 62.8 112 39.3
CARHR012750 Cardamine hirsuta HOM05D001042 ORTHO05D006654 2.2e-07 60.5 116 42.2
CAN.G58.24 Capsicum annuum HOM05D009195 ORTHO05D000137 7.1e-06 55.5 38 78.9
CAN.G11.34 Capsicum annuum HOM05D000453 ORTHO05D000387 9.3e-06 55.1 58 56.9


User provided reference genes

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