Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1194.3 Capsicum annuum HOM05D000090 ORTHO05D043403 1.6e-32 142.1 71 100.0
Nitab4.5_0008728g0030 Nicotiana tabacum HOM05D000090 ORTHO05D000083 1.4e-23 112.5 64 79.7
Peaxi162Scf01073g00018 Petunia axillaris HOM05D000090 ORTHO05D000083 4.0e-23 110.9 64 78.1
Peaxi162Scf00160g00002 Petunia axillaris HOM05D000090 ORTHO05D000083 6.8e-23 110.2 64 79.7
Solyc12g088710.1 Solanum lycopersicum HOM05D000090 ORTHO05D000083 1.2e-22 109.4 64 81.2
PGSC0003DMG400015439 Solanum tuberosum HOM05D000090 ORTHO05D000083 2.6e-22 108.2 64 81.2
Sopen12g030610 Solanum pennellii HOM05D000090 ORTHO05D000083 4.4e-22 107.5 64 79.7
Nitab4.5_0011437g0010 Nicotiana tabacum HOM05D000090 ORTHO05D000083 7.5e-22 106.7 64 76.6
PGSC0003DMG400015438 Solanum tuberosum HOM05D000090 ORTHO05D000083 9.8e-22 106.3 64 81.2
PGSC0003DMG400015437 Solanum tuberosum HOM05D000090 ORTHO05D000083 3.7e-21 104.4 64 78.1
PGSC0003DMG400039789 Solanum tuberosum HOM05D000090 ORTHO05D000083 1.1e-20 102.8 64 78.1
Solyc12g088700.1 Solanum lycopersicum HOM05D000090 ORTHO05D000083 4.1e-20 100.9 64 76.6
Sopen12g030600 Solanum pennellii HOM05D000090 ORTHO05D000083 4.1e-20 100.9 64 76.6
CAN.G1194.16 Capsicum annuum HOM05D000090 ORTHO05D043403 1.6e-16 89.0 53 86.8
Sopen12g030590 Solanum pennellii HOM05D000090 ORTHO05D000083 4.7e-16 87.4 58 74.1
Lj4A768G86 Lonicera japonica HOM05D000090 ORTHO05D000083 1.7e-10 68.9 63 46.0
Lj4A768G88 Lonicera japonica HOM05D000090 ORTHO05D000083 1.7e-10 68.9 63 46.0
Lj4A768G89 Lonicera japonica HOM05D000090 ORTHO05D000083 1.7e-10 68.9 63 46.0
Nitab4.5_0001073g0020 Nicotiana tabacum HOM05D000090 ORTHO05D000083 1.1e-09 66.2 61 52.5
Nitab4.5_0000170g0500 Nicotiana tabacum HOM05D000090 ORTHO05D000083 1.9e-09 65.5 61 52.5
Hma1.2p1_0360F.1_g135810 Hydrangea macrophylla HOM05D000090 ORTHO05D000083 3.3e-09 64.7 64 46.9
DCAR_008815 Daucus carota HOM05D000090 ORTHO05D000083 4.3e-09 64.3 63 49.2
Lj4C768T21 Lonicera japonica HOM05D000090 ORTHO05D000083 1.2e-08 62.8 63 46.0
Nitab4.5_0000170g0490 Nicotiana tabacum HOM05D000090 ORTHO05D000083 1.2e-08 62.8 60 48.3
Nitab4.5_0001073g0030 Nicotiana tabacum HOM05D000090 ORTHO05D000083 1.2e-08 62.8 60 48.3
Hma1.2p1_0360F.1_g135790 Hydrangea macrophylla HOM05D000090 ORTHO05D000083 2.8e-08 61.6 64 45.3
Lj4P768T79 Lonicera japonica HOM05D000090 ORTHO05D000083 2.8e-08 61.6 63 42.9
Lj4C768T0 Lonicera japonica HOM05D000090 ORTHO05D000083 4.7e-08 60.8 63 44.4
Hma1.2p1_0360F.1_g135780 Hydrangea macrophylla HOM05D000090 ORTHO05D000083 8.1e-08 60.1 64 43.8
Rhsim06G0053800 Rhododendron simsii HOM05D000090 ORTHO05D000083 8.1e-08 60.1 64 50.0
Cc10_g04750 Coffea canephora HOM05D000090 ORTHO05D000083 1.1e-07 59.7 64 46.9
Peaxi162Scf00011g00172 Petunia axillaris HOM05D000090 ORTHO05D000083 1.1e-07 59.7 64 48.4
TAR628G1104 Trochodendron aralioides HOM05D000090 ORTHO05D000083 1.4e-07 59.3 65 47.7
Peaxi162Scf00312g00710 Petunia axillaris HOM05D000090 ORTHO05D000083 1.8e-07 58.9 64 48.4
Peaxi162Scf00393g00043 Petunia axillaris HOM05D000090 ORTHO05D000083 1.8e-07 58.9 60 45.0
HanXRQChr11g0350951 Helianthus annuus HOM05D000090 ORTHO05D000083 2.4e-07 58.5 63 41.3
Lsat_1_v5_gn_9_112720 Lactuca sativa HOM05D000090 ORTHO05D000083 2.4e-07 58.5 70 45.7
Lsat_1_v5_gn_1_50780 Lactuca sativa HOM05D000090 ORTHO05D000083 3.1e-07 58.2 63 46.0
Lalb_Chr08g0238021 Lupinus albus HOM05D000090 ORTHO05D000083 3.1e-07 58.2 71 46.5
Medtr4g031800 Medicago truncatula HOM05D000090 ORTHO05D000083 3.1e-07 58.2 66 48.5
Rhsim06G0054000 Rhododendron simsii HOM05D000090 ORTHO05D000083 4.0e-07 57.8 62 48.4
TAR628G0386 Trochodendron aralioides HOM05D000090 ORTHO05D000083 4.0e-07 57.8 65 47.7
Peaxi162Scf00312g00813 Petunia axillaris HOM05D000090 ORTHO05D000083 6.8e-07 57.0 64 46.9
PGSC0003DMG400011740 Solanum tuberosum HOM05D000090 ORTHO05D000083 1.2e-06 56.2 61 44.3
DCAR_005250 Daucus carota HOM05D000090 ORTHO05D000083 2.0e-06 55.5 66 47.0
Lsat_1_v5_gn_9_112660 Lactuca sativa HOM05D000090 ORTHO05D000083 2.0e-06 55.5 70 44.3
Rhsim06G0054200 Rhododendron simsii HOM05D000090 ORTHO05D000083 2.0e-06 55.5 65 46.2
CiPaw.14G046300 Carya illinoinensis HOM05D000090 ORTHO05D000083 2.6e-06 55.1 64 46.9
Medtr4g117960 Medicago truncatula HOM05D000090 ORTHO05D000083 2.6e-06 55.1 64 48.4
vmacro21493 Vaccinium macrocarpon HOM05D000090 ORTHO05D000083 2.6e-06 55.1 64 45.3
Lj4g0020319 Lotus japonicus HOM05D000090 ORTHO05D000083 3.4e-06 54.7 66 45.5
Sopen07g023000 Solanum pennellii HOM05D000090 ORTHO05D000083 4.4e-06 54.3 61 44.3
TAR381G0920 Trochodendron aralioides HOM05D000090 ORTHO05D000083 4.4e-06 54.3 64 42.2
TAR381G1298 Trochodendron aralioides HOM05D000090 ORTHO05D000083 4.4e-06 54.3 64 42.2
DCAR_019425 Daucus carota HOM05D000090 ORTHO05D000083 5.8e-06 53.9 64 40.6
Solyc07g043410.1 Solanum lycopersicum HOM05D000090 ORTHO05D000083 5.8e-06 53.9 61 42.6
Lsat_1_v5_gn_9_112700 Lactuca sativa HOM05D000090 ORTHO05D000083 7.6e-06 53.5 62 40.3
Medtr4g117980 Medicago truncatula HOM05D000090 ORTHO05D000083 7.6e-06 53.5 64 43.8
Sed0027868 Sechium edule HOM05D000090 ORTHO05D000083 7.6e-06 53.5 65 40.0
PGSC0003DMG400017508 Solanum tuberosum HOM05D000090 ORTHO05D000083 7.6e-06 53.5 66 40.9
Lj4g0000540 Lotus japonicus HOM05D000090 ORTHO05D000083 9.9e-06 53.1 64 43.8


User provided reference genes

Program Settings