Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 4.8e-129 464.5 239 100.0
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.9e-122 442.6 239 94.6
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.3e-122 441.4 239 95.0
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 3.7e-121 438.3 239 94.1
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 5.0e-110 401.4 239 82.8
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 9.4e-109 397.1 239 80.8
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 3.6e-108 395.2 239 82.0
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.7e-108 394.8 239 81.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 6.1e-108 394.4 239 82.8
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.0e-107 393.7 239 82.0
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.0e-107 392.1 239 80.8
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-106 390.2 239 79.9
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.1e-104 381.7 239 84.5
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 4.1e-104 381.7 233 81.5
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.3e-104 381.3 239 78.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 7.0e-104 380.9 234 79.9
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.6e-103 379.8 238 77.3
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.0e-102 377.1 234 79.1
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.3e-102 376.7 236 78.4
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.3e-102 376.7 236 78.4
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.2e-102 375.9 236 78.4
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.2e-102 375.9 233 80.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 78.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 5.0e-102 374.8 234 79.5
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.5e-101 372.5 236 76.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.2e-101 372.1 236 77.5
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 3.2e-101 372.1 236 78.0
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 4.2e-101 371.7 235 76.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 5.5e-101 371.3 236 77.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 5.5e-101 371.3 236 77.5
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.5e-101 371.3 233 78.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 7.2e-101 370.9 236 77.5
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 7.2e-101 370.9 235 77.0
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 9.4e-101 370.5 236 77.1
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 9.4e-101 370.5 236 76.7
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 9.4e-101 370.5 236 77.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.2e-100 370.2 237 75.5
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.6e-100 369.8 236 77.1
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 1.6e-100 369.8 239 77.8
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.7e-100 369.0 236 76.7
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 2.7e-100 369.0 236 77.1
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 8.0e-100 367.5 232 78.0
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.0e-99 367.1 233 78.5
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.0e-99 365.5 233 76.0
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 3.0e-99 365.5 236 78.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 5.2e-99 364.8 233 77.3
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 8.8e-99 364.0 240 75.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.2e-98 363.6 233 76.4
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.0e-98 362.8 233 77.3
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.6e-98 362.5 234 76.5
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.6e-98 362.5 233 76.0
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 9.7e-98 360.5 260 70.4
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 9.7e-98 360.5 233 76.0
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.8e-97 359.0 236 74.2
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 3.7e-97 358.6 234 74.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.7e-97 358.6 233 76.4
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 6.3e-97 357.8 236 75.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 6.3e-97 357.8 236 74.6
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 8.2e-97 357.5 236 74.2
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 8.2e-97 357.5 307 61.9
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.8e-96 356.3 279 67.0
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.4e-96 355.9 235 72.8
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 4.1e-96 355.1 233 75.5
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 4.1e-96 355.1 233 76.4
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 5.3e-96 354.8 204 85.8
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.2e-95 353.6 234 74.4
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.7e-95 352.4 237 74.3
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.5e-95 352.1 224 78.6
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.5e-95 351.7 237 73.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.0e-94 350.5 232 80.2
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.2e-94 349.4 272 66.9
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.2e-94 349.4 236 73.7
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 3.8e-94 348.6 234 73.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.1e-92 342.8 236 72.5
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.0e-91 339.0 228 74.1
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.0e-90 336.3 210 81.0
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 9.8e-90 334.0 235 71.5
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.7e-89 332.0 205 81.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 4.8e-89 331.6 266 67.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 6.3e-89 331.3 201 80.6
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.4e-88 329.3 208 77.9
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.4e-88 328.2 236 67.8
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.7e-86 323.2 233 72.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.7e-86 323.2 190 82.6
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.3e-86 322.8 236 64.8
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 2.9e-86 322.4 206 76.7
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 3.8e-86 322.0 190 85.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.5e-85 320.1 234 67.1
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-85 318.9 198 78.3
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.2e-85 318.5 212 75.0
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.5e-85 318.2 234 66.2
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.2e-85 317.8 225 72.0
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 7.2e-85 317.8 201 77.6
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 9.5e-85 317.4 199 79.4
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.1e-84 316.2 235 66.4
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.6e-84 315.5 234 70.1
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.6e-84 315.5 234 70.1
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.6e-84 315.5 218 72.9
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.0e-84 314.3 234 65.8
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.8e-83 313.2 235 64.3
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.2e-81 306.2 208 76.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.8e-80 303.1 170 87.1
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 8.6e-78 294.3 196 70.4
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-77 293.9 225 64.4
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 2.5e-77 292.7 235 62.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 2.5e-77 292.7 235 62.1
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 5.6e-77 291.6 235 62.6
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 5.6e-77 291.6 235 61.7
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.6e-76 290.0 235 62.1
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.7e-76 288.5 259 64.5
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 6.1e-76 288.1 150 96.7
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 4.4e-74 282.0 166 82.5
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.9e-73 279.3 227 58.6
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.1e-72 277.3 185 72.4
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.5e-71 272.3 230 63.9
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 6.0e-71 271.6 226 59.3
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 7.8e-71 271.2 166 80.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.5e-69 266.2 236 55.9
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.3e-69 265.8 153 85.0
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.4e-66 255.8 227 55.1
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.4e-64 250.4 219 53.4
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.2e-64 247.7 201 66.2
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.9e-61 240.0 219 55.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 3.3e-61 239.2 226 53.1
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 7.1e-56 221.5 129 85.3
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 3.3e-53 212.6 167 61.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.5e-50 203.8 135 74.1
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.9e-49 198.7 135 71.1
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.7e-47 193.0 236 48.3
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 4.6e-47 192.2 236 47.0
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 8.1e-44 181.4 236 48.3
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.3e-41 174.1 106 78.3
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 3.2e-40 169.5 102 81.4
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 7.1e-40 168.3 111 74.8
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.3e-38 163.3 104 76.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.5e-34 150.6 112 67.9
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 5.8e-34 148.7 265 38.9
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.9e-32 143.7 211 38.9
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 7.9e-31 138.3 133 51.1
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 4.3e-29 132.5 76 82.9
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.1e-28 128.3 215 34.9
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.6e-26 123.2 68 92.6
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.1e-23 113.6 224 34.4
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.1e-23 113.6 224 34.4
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.0e-22 111.3 74 68.9
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 6.7e-22 108.6 98 62.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.4e-19 100.1 56 85.7
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 3.5e-15 86.3 49 79.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.5e-15 86.3 51 80.4
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.0e-15 85.5 89 50.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 6.7e-14 82.0 196 30.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 7.4e-13 78.6 52 69.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-11 74.7 48 70.8
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.5e-10 69.3 52 55.8
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 1.0e-09 68.2 56 62.5
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 8.5e-09 65.1 50 58.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 2.7e-07 60.1 46 67.4


User provided reference genes

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