Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 7.6e-92 340.5 174 100.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 7.1e-82 307.4 174 88.5
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 8.7e-80 300.4 174 88.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 8.7e-80 300.4 174 88.5
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.5e-79 298.9 174 86.2
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.3e-79 298.5 174 85.6
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.1e-77 293.5 174 86.2
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.2e-73 280.0 174 78.2
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 75.9
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 75.9
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 75.9
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 77.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.3
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.1
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 75.3
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 74.1
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 74.1
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 75.3
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 74.7
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 73.6
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.0
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 76.4
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 76.4
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 75.9
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 76.4
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 74.7
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 75.9
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 75.3
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 73.6
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 74.7
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 75.3
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 75.3
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 71.8
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 6.5e-67 257.7 175 73.1
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 73.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 71.8
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 4.2e-66 255.0 175 72.6
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 71.3
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 72.4
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.5e-66 254.6 156 77.6
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 74.7
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 71.8
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 73.6
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 72.4
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 70.7
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 73.0
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 73.6
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 73.0
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 71.3
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 74.1
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 71.3
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 71.8
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 70.1
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 71.3
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.0e-64 248.8 174 71.3
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 3.0e-64 248.8 174 70.1
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 70.7
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 71.3
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.5e-63 246.5 171 70.8
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 69.5
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 69.0
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 70.7
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 71.8
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.5e-63 245.7 173 68.8
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 70.7
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 69.5
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 70.7
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 72.4
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 69.5
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 69.5
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 1.3e-62 243.4 198 64.6
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 69.5
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 70.1
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 71.3
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 68.4
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 69.0
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 69.0
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 67.8
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 69.0
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 69.0
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 68.4
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 70.1
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 3.1e-61 238.8 174 67.8
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 4.1e-61 238.4 164 70.7
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 4.1e-61 238.4 194 64.4
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 69.0
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.5e-60 236.5 171 68.4
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.5e-60 236.5 164 70.1
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.0e-60 236.1 174 67.2
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 4.5e-60 235.0 171 67.3
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 1.0e-59 233.8 174 67.8
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 67.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 5.0e-59 231.5 174 65.5
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 1.1e-58 230.3 174 64.9
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.4e-58 229.9 174 66.7
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.4e-58 229.9 158 72.2
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.2e-58 228.4 174 65.5
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 9.4e-58 227.3 174 64.4
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.0e-56 223.8 143 72.7
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.1e-56 221.5 196 60.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 8.8e-56 220.7 151 69.5
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 8.8e-56 220.7 176 64.8
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 1.1e-55 220.3 175 64.0
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.5e-55 219.9 174 62.6
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.6e-52 209.1 173 61.3
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 4.5e-52 208.4 171 60.8
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.9e-52 208.0 171 60.8
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.7e-52 207.6 122 77.9
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.0e-51 207.2 239 50.2
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.7e-51 206.5 146 69.9
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 8.5e-51 204.1 147 70.7
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 2.7e-49 199.1 122 74.6
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 4.4e-47 191.8 171 57.3
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.6e-44 183.3 122 68.9
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.3e-43 180.3 175 53.1
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.2e-43 179.5 186 54.3
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 4.7e-41 171.8 176 52.3
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.0e-40 170.6 174 50.6
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 5.3e-37 158.3 173 50.9
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 1.0e-35 154.1 173 45.7
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.5e-34 150.2 94 72.3
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.5e-34 150.2 94 72.3
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 7.2e-34 147.9 95 71.6
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.0e-32 144.1 93 73.1
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 9.8e-31 137.5 84 75.0
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.9e-27 125.9 127 57.5
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 3.3e-26 122.5 119 55.5
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 4.4e-23 112.1 96 54.2
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 4.4e-23 112.1 81 64.2
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 4.4e-23 112.1 85 67.1
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 8.6e-19 97.8 173 35.8
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 9.5e-18 94.4 53 75.5
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.6e-17 92.4 55 70.9
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.2e-14 83.2 48 72.9
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.1e-13 80.9 180 32.2
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 5.4e-13 78.6 175 29.1
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.0e-12 76.6 93 46.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-11 74.3 38 81.6
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.9e-06 55.5 28 82.1


User provided reference genes

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