Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 6.2e-202 707.2 351 100.0
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 5.1e-172 607.8 354 85.6
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 7.4e-171 604.0 354 85.0
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.3e-170 603.2 354 84.7
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 5.3e-161 571.2 368 78.8
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 8.5e-159 563.9 350 81.4
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 4.7e-149 531.6 355 76.1
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 1.2e-133 480.3 354 69.5
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 2.3e-127 459.5 350 66.6
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 2.3e-127 459.5 350 66.6
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 5.2e-124 448.4 372 66.1
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 8.9e-124 447.6 350 66.9
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-122 443.7 352 65.1
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 6.4e-122 441.4 349 65.3
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.4e-121 440.3 352 64.2
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 3.2e-121 439.1 353 66.3
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.5e-120 435.6 354 63.8
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 4.6e-120 435.3 355 63.1
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 6.6e-119 431.4 350 62.3
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 7.3e-118 427.9 354 61.9
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 9.5e-118 427.6 353 61.2
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 6.2e-117 424.9 354 61.6
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 6.2e-117 424.9 354 61.6
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 1.2e-115 420.6 348 61.8
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 5.8e-115 418.3 354 60.7
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 7.6e-115 417.9 351 63.0
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 3.7e-114 415.6 351 60.4
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.4e-113 413.7 338 63.6
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 4.1e-113 412.1 335 63.9
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 5.4e-113 411.8 349 62.2
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 7.1e-113 411.4 357 62.5
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 9.2e-113 411.0 361 59.8
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 2.1e-112 409.8 349 61.6
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 1.9e-110 403.3 349 60.7
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 4.3e-110 402.1 375 57.9
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 1.2e-109 400.6 355 60.3
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 1.1e-108 397.5 350 56.6
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 2.4e-108 396.4 354 58.8
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.4e-108 396.4 352 59.1
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 2.4e-108 396.4 349 58.7
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 2.4e-108 396.4 349 58.7
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 1.5e-107 393.7 352 58.2
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.5e-107 393.7 358 57.3
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 2.6e-107 392.9 349 59.6
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 7.6e-107 391.3 354 59.6
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 1.3e-106 390.6 353 58.6
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 2.2e-106 389.8 357 58.0
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.9e-106 389.4 348 59.5
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 6.4e-106 388.3 349 57.9
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 6.4e-106 388.3 352 59.1
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 8.4e-106 387.9 362 58.0
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.4e-106 387.9 352 59.9
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 8.4e-106 387.9 349 57.6
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.1e-105 387.5 349 57.6
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 1.4e-105 387.1 362 57.7
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 3.2e-105 386.0 349 57.9
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 3.2e-105 386.0 353 57.5
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 4.2e-105 385.6 348 56.9
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 1.2e-104 384.0 360 57.8
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.6e-104 383.6 362 57.7
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 1.6e-104 383.6 362 58.6
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.1e-104 383.3 353 58.4
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 3.5e-104 382.5 350 56.9
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 6.0e-104 381.7 352 58.0
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 7.8e-104 381.3 356 57.9
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 7.8e-104 381.3 354 57.9
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 3.9e-103 379.0 356 55.6
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 6.6e-103 378.3 357 58.3
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 6.6e-103 378.3 362 56.4
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 6.6e-103 378.3 351 57.8
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 6.6e-103 378.3 359 56.0
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 8.7e-103 377.9 353 55.2
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 1.1e-102 377.5 357 57.4
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.9e-102 376.7 350 56.3
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 4.3e-102 375.6 357 58.8
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 1.6e-101 373.6 353 54.7
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 2.1e-101 373.2 349 59.3
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 2.8e-101 372.9 338 58.6
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.4e-100 370.5 362 57.2
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 3.1e-100 369.4 362 55.2
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 2.4e-97 359.8 355 52.4
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 1.0e-95 354.4 337 55.5
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 3.0e-95 352.8 366 54.6
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 5.1e-95 352.1 367 51.5
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 3.3e-94 349.4 340 57.1
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 3.3e-94 349.4 340 57.6
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 7.3e-94 348.2 353 50.7
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 9.6e-94 347.8 340 57.4
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.3e-93 347.4 362 55.0
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 1.6e-93 347.1 335 57.3
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 9.0e-92 341.3 339 56.0
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 2.6e-91 339.7 358 51.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 5.1e-87 325.5 234 68.8
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 2.5e-86 323.2 247 66.0
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 2.4e-84 316.6 333 52.0
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 2.1e-80 303.5 355 46.5
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 9.0e-76 288.1 356 46.3
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.1e-70 271.2 163 74.8
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 2.4e-68 263.5 283 52.3
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 5.3e-68 262.3 349 42.7
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 3.1e-60 236.5 232 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 7.7e-59 231.9 371 38.3
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 2.0e-54 217.2 229 50.2
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 5.7e-54 215.7 304 44.4
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 1.0e-50 204.9 146 71.2
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 9.4e-49 198.4 206 51.5
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-47 194.9 207 53.1
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-45 188.0 207 51.2
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.7e-45 187.6 206 51.9
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-45 186.8 122 73.8
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.6e-43 181.0 206 51.0
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 1.3e-42 177.9 143 58.7
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 5.0e-42 176.0 207 49.8
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.5e-41 174.5 378 31.0
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 1.9e-41 174.1 124 66.9
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 8.5e-34 148.7 167 44.9
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.5e-25 120.6 206 41.3
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-24 117.1 66 83.3
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.4e-22 110.2 66 77.3
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.9e-18 97.1 66 74.2
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 1.9e-12 77.8 123 42.3
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 7.0e-12 75.9 52 63.5
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 3.5e-11 73.6 53 64.2
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 3.5e-11 73.6 53 64.2
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 3.5e-11 73.6 53 64.2
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 1.3e-10 71.6 52 63.5
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 1.7e-10 71.2 156 32.1
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 1.7e-10 71.2 51 62.7
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 1.2e-06 58.5 49 57.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 1.2e-06 58.5 49 57.1
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 1.2e-06 58.5 49 57.1
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 1.2e-06 58.5 49 57.1


User provided reference genes

Program Settings