Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 4.4e-94 347.8 161 100.0
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 9.8e-86 320.1 161 91.9
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 1.1e-79 300.1 152 89.5
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 4.6e-75 284.6 161 77.0
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 5.1e-74 281.2 146 84.9
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 5.1e-74 281.2 150 82.7
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 6.6e-74 280.8 152 82.9
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 3.3e-73 278.5 146 83.6
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 3.3e-73 278.5 152 82.2
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 3.3e-73 278.5 152 82.2
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 3.3e-73 278.5 152 81.6
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 1.6e-72 276.2 161 75.8
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 1.6e-72 276.2 152 82.9
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 4.7e-72 274.6 149 81.9
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 1.4e-71 273.1 137 87.6
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 1.4e-71 273.1 149 79.9
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 1.4e-71 273.1 145 85.5
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 1.8e-71 272.7 163 74.8
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 5.2e-71 271.2 151 78.8
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 5.2e-71 271.2 153 79.7
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 2.0e-70 269.2 152 79.6
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 3.4e-70 268.5 153 81.0
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 3.4e-70 268.5 146 82.2
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 3.4e-70 268.5 145 81.4
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 4.4e-70 268.1 153 81.0
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 4.4e-70 268.1 160 73.8
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.3e-69 266.5 152 78.9
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.7e-69 266.2 143 82.5
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 1.7e-69 266.2 149 80.5
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 2.2e-69 265.8 150 77.3
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 2.2e-69 265.8 150 80.0
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 2.9e-69 265.4 161 74.5
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 2.9e-69 265.4 152 78.3
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 3.8e-69 265.0 150 77.3
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 4.9e-69 264.6 150 75.3
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 6.4e-69 264.2 145 80.7
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 6.4e-69 264.2 145 80.0
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 6.4e-69 264.2 150 77.3
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 1.4e-68 263.1 139 82.7
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 3.2e-68 261.9 152 77.6
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 3.2e-68 261.9 143 78.3
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 3.2e-68 261.9 145 80.7
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 4.1e-68 261.5 152 75.7
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 4.1e-68 261.5 155 76.1
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 5.4e-68 261.2 152 75.0
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 5.4e-68 261.2 152 76.3
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 5.4e-68 261.2 154 75.3
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 7.1e-68 260.8 152 75.7
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 9.2e-68 260.4 151 78.1
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 9.2e-68 260.4 153 76.5
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 1.6e-67 259.6 144 81.2
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 2.1e-67 259.2 170 72.4
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 3.5e-67 258.5 151 72.2
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 3.5e-67 258.5 162 69.1
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.6e-67 258.1 151 78.1
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 6.0e-67 257.7 154 75.3
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.0e-66 256.9 154 72.1
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.3e-66 256.5 158 73.4
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 1.7e-66 256.1 150 76.0
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 2.3e-66 255.8 153 76.5
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 3.0e-66 255.4 146 77.4
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 3.9e-66 255.0 150 74.0
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 5.1e-66 254.6 145 74.5
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 6.6e-66 254.2 155 74.8
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 8.6e-66 253.8 153 75.8
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 8.6e-66 253.8 153 76.5
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 1.5e-65 253.1 163 71.8
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.5e-65 252.3 158 72.2
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 3.3e-65 251.9 153 77.1
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 4.3e-65 251.5 146 76.7
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 5.6e-65 251.1 150 74.0
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 9.6e-65 250.4 155 73.5
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 9.6e-65 250.4 152 76.3
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 9.6e-65 250.4 152 76.3
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 2.1e-64 249.2 153 75.2
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 2.1e-64 249.2 150 72.0
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 2.1e-64 249.2 160 69.4
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 3.6e-64 248.4 152 75.7
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 4.7e-64 248.1 152 75.7
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 1.1e-63 246.9 155 72.3
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 1.4e-63 246.5 152 73.0
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 1.3e-61 240.0 197 58.9
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 3.8e-61 238.4 146 71.9
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 1.2e-59 233.4 151 66.9
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 1.1e-57 226.9 150 71.3
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 9.9e-54 213.8 116 78.4
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 2.9e-53 212.2 116 78.4
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 3.8e-53 211.8 127 74.0
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 9.3e-52 207.2 147 67.3
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.2e-51 206.8 118 77.1
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.6e-51 206.5 135 71.1
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 6.0e-51 204.5 117 79.5
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 5.6e-49 198.0 145 57.2
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 1.3e-48 196.8 152 56.6
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 6.9e-47 191.0 105 81.0
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 4.5e-46 188.3 126 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 3.8e-45 185.3 151 53.0
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 2.7e-43 179.1 103 76.7
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 8.7e-42 174.1 154 51.3
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 1.3e-40 170.2 158 50.6
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 3.8e-37 158.7 78 89.7
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 3.2e-36 155.6 88 85.2
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 7.9e-35 151.0 83 86.7
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 2.9e-29 132.5 105 54.3
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 8.5e-29 131.0 155 39.4
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.3e-26 122.9 74 73.0
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.1e-25 120.6 153 34.6
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 1.7e-24 116.7 134 35.8
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 4.1e-23 112.1 53 90.6
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 5.3e-23 111.7 68 67.6
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 7.7e-22 107.8 87 60.9
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 7.7e-22 107.8 87 62.1
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.2e-20 102.1 68 72.1
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 9.4e-20 100.9 51 86.3
CBR_g50885 Chara braunii HOM05D006727 ORTHO05D008408 9.1e-15 84.3 124 34.7
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 1.5e-09 67.0 68 51.5
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 5.3e-07 58.5 56 55.4


User provided reference genes

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