Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.1e-189 666.4 320 100.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.8e-168 595.9 311 91.3
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 2.9e-166 588.6 311 90.4
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 1.5e-165 586.3 311 90.0
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 6.0e-151 537.7 311 85.2
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 2.9e-145 518.8 309 80.3
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.4e-139 500.0 303 78.9
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.5e-138 496.5 307 78.2
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.3e-137 493.4 307 77.9
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.9e-137 492.3 304 78.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 6.4e-137 491.1 307 76.9
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 6.4e-137 491.1 307 76.9
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 8.4e-137 490.7 307 78.5
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.1e-136 490.3 301 78.1
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.1e-136 490.3 311 78.8
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.4e-136 490.0 310 77.7
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 4.1e-136 488.4 303 78.5
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 4.1e-136 488.4 309 75.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 5.4e-136 488.0 310 76.1
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.6e-135 486.5 292 80.1
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 2.7e-135 485.7 315 75.2
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.7e-135 485.7 307 77.2
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 3.5e-135 485.3 303 77.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 6.0e-135 484.6 301 78.7
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 7.8e-135 484.2 307 76.2
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 7.8e-135 484.2 306 76.8
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.0e-134 482.3 305 74.8
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 5.1e-134 481.5 304 77.6
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.1e-133 480.3 297 78.5
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.5e-133 479.9 309 75.4
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 7.3e-133 477.6 303 75.2
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.1e-132 476.1 307 75.9
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.6e-132 475.3 304 74.7
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.8e-131 473.0 305 75.4
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.8e-131 473.0 325 71.7
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 3.1e-131 472.2 300 75.0
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.1e-131 472.2 302 77.5
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 5.2e-131 471.5 297 75.4
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 5.2e-131 471.5 306 75.5
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 8.9e-131 470.7 307 75.2
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 8.9e-131 470.7 298 76.2
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.0e-130 469.5 304 74.7
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.4e-130 468.8 299 76.6
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.4e-130 468.8 296 77.4
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 3.4e-130 468.8 310 74.2
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 4.4e-130 468.4 300 76.7
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 4.4e-130 468.4 312 72.4
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 9.9e-130 467.2 303 73.9
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.3e-129 466.8 299 76.3
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 2.2e-129 466.1 307 75.9
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 2.2e-129 466.1 300 75.0
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 3.8e-129 465.3 302 75.5
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 2.4e-128 462.6 299 75.3
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 2.4e-128 462.6 312 71.8
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 3.2e-128 462.2 296 75.7
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.2e-128 461.8 281 79.0
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 4.2e-128 461.8 304 74.3
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 4.2e-128 461.8 304 73.7
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 4.2e-128 461.8 315 72.7
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 5.4e-128 461.5 297 76.1
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.2e-127 460.3 300 75.0
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 4.6e-127 458.4 306 72.9
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 6.0e-127 458.0 296 73.6
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 6.0e-127 458.0 306 72.9
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 7.8e-127 457.6 296 75.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 7.8e-127 457.6 303 73.6
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 7.8e-127 457.6 305 73.8
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.0e-126 457.2 298 74.5
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.3e-126 456.8 323 70.9
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.7e-126 456.4 307 73.0
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 3.9e-126 455.3 297 73.7
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 6.6e-126 454.5 304 72.0
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.5e-125 453.4 304 72.7
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 3.3e-125 452.2 303 73.3
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 5.6e-125 451.4 309 71.5
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 7.3e-125 451.1 307 73.3
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 7.3e-125 451.1 237 91.1
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.1e-124 449.5 284 77.1
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.1e-124 449.5 302 73.2
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.8e-124 448.4 307 72.0
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 6.2e-124 448.0 273 79.9
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 8.1e-124 447.6 308 72.4
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.3e-123 444.9 306 70.6
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 4.5e-122 441.8 307 71.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 2.2e-121 439.5 307 71.7
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 3.8e-121 438.7 310 71.0
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.1e-120 437.2 334 65.9
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 7.1e-120 434.5 304 71.1
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.0e-118 430.6 285 74.4
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.0e-118 429.1 307 70.7
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 6.7e-118 427.9 300 69.7
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 3.6e-116 422.2 304 70.4
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 2.2e-113 412.9 297 70.4
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.1e-112 410.6 313 66.8
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 3.2e-112 409.1 226 84.5
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.0e-110 404.1 357 59.7
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.1e-109 400.6 320 63.4
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.3e-109 399.1 303 66.3
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.8e-108 396.0 302 64.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 9.0e-107 391.0 322 62.4
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.2e-105 386.3 239 78.7
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 4.6e-103 378.6 298 64.8
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.8e-102 376.7 271 66.4
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 6.7e-102 374.8 267 67.4
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.8e-100 369.4 271 66.4
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.0e-98 363.2 292 63.0
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.5e-96 355.1 269 66.5
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.8e-94 350.1 247 68.4
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 5.1e-94 348.6 274 65.0
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.4e-86 323.9 246 65.9
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 5.9e-82 308.5 307 56.0
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 2.2e-81 306.6 290 56.9
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 8.8e-78 294.7 226 66.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.8e-75 287.0 185 75.7
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 3.2e-72 276.2 214 62.1
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 9.4e-72 274.6 195 71.3
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.5e-69 267.3 282 48.9
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.3e-68 264.2 180 72.2
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 6.8e-62 241.9 199 57.3
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.0e-61 240.4 200 58.0
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.6e-61 240.0 218 55.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 9.8e-61 238.0 190 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 4.8e-60 235.7 200 56.0
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 6.5e-57 225.3 195 56.4
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 9.8e-53 211.5 213 50.7
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.5e-50 203.0 296 43.2
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 2.5e-48 196.8 120 78.3
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 4.3e-48 196.1 292 43.5
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 8.6e-41 171.8 114 75.4
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.4e-38 164.5 170 50.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 3.4e-37 159.8 106 68.9
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.2e-36 157.1 97 71.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 6.0e-34 149.1 100 67.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 8.9e-30 135.2 68 88.2
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 1.9e-27 127.5 106 60.4
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 6.8e-22 109.0 114 54.4
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 1.7e-17 94.4 94 56.4
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.7e-17 94.4 101 53.5
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 3.0e-17 93.6 65 61.5
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 4.3e-16 89.7 102 52.9
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.2e-13 81.6 50 74.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 7.6e-13 79.0 37 89.2
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 1.7e-12 77.8 81 48.1
Thhalv10009342m.g Eutrema salsugineum HOM05D001659 ORTHO05D001659 7.8e-10 68.9 194 30.4
Sp1g28550 Schrenkiella parvula HOM05D001659 ORTHO05D001659 2.3e-09 67.4 194 29.9
AT1G32350 Arabidopsis thaliana HOM05D001659 ORTHO05D001659 3.9e-09 66.6 194 29.9
AL1G46540 Arabidopsis lyrata HOM05D001659 ORTHO05D001659 6.6e-09 65.9 191 28.3
A05p24980 Brassica napus HOM05D001659 ORTHO05D001659 6.6e-09 65.9 194 29.9
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 7.3e-08 62.4 71 53.5
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.4e-06 57.4 53 56.6


User provided reference genes

Program Settings