Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 0.0e+00 1534.6 773 100.0
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1429.8 773 93.7
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1425.6 773 93.1
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1359.0 833 84.6
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1333.2 772 88.6
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 0.0e+00 1300.4 775 86.1
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1140.2 780 73.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1117.4 779 71.9
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1117.1 779 71.8
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1107.0 771 71.9
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1094.7 780 70.9
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1090.9 780 70.8
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1088.9 778 70.2
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 0.0e+00 1085.5 777 70.1
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1085.1 780 69.2
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1084.7 781 69.7
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1081.6 778 70.6
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1078.9 781 69.3
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1077.4 781 70.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 5.3e-312 1073.5 778 69.8
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 2.6e-311 1071.6 779 70.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 3.7e-311 1071.2 798 69.3
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 4.8e-311 1070.8 782 69.3
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 788 69.2
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 871 64.5
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.4e-309 1064.7 775 69.9
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 781 68.1
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.1e-307 1057.0 777 69.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.6e-306 1055.8 779 68.3
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.1e-306 1055.4 785 67.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 4.6e-306 1054.3 780 68.1
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 4.6e-306 1054.3 781 68.2
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 2.5e-304 1048.5 785 67.4
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 5.6e-304 1047.3 780 66.9
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.2e-303 1046.2 767 69.4
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.1e-303 1045.4 782 68.9
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 3.6e-303 1044.6 777 68.6
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 6.2e-303 1043.9 782 68.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 8.1e-303 1043.5 781 66.7
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 2.4e-302 1042.0 781 67.6
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 8.4e-300 1033.5 780 66.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 2.4e-299 1031.9 784 67.0
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 7.1e-299 1030.4 783 66.7
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 7.1e-299 1030.4 792 65.4
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 2.7e-298 1028.5 779 66.9
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.5e-298 1028.1 779 67.5
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 9.6e-296 1020.0 781 65.3
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 9.6e-296 1020.0 780 66.7
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 1.2e-295 1019.6 778 65.6
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 9.9e-293 1010.0 784 67.0
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.7e-292 1009.2 782 66.4
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.8e-292 1008.1 777 65.1
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 3.2e-291 1005.0 806 63.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.9e-289 998.0 883 59.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 5.1e-289 997.7 783 65.1
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 6.6e-289 997.3 774 66.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.5e-288 995.3 880 59.4
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 9.6e-288 993.4 787 63.0
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.1e-287 992.3 782 63.2
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 2.1e-287 992.3 751 66.7
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 8.1e-287 990.3 780 63.8
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.1e-286 988.4 775 63.9
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 5.3e-286 987.6 781 64.0
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 9.0e-286 986.9 782 62.8
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.6e-285 985.3 791 62.1
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 9.9e-285 983.4 779 63.2
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 2.2e-284 982.2 776 63.1
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.4e-283 978.8 780 63.5
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 3.2e-283 978.4 781 63.4
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 4.2e-283 978.0 780 64.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 9.3e-283 976.9 784 63.8
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 7.9e-282 973.8 780 62.3
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.5e-280 969.5 780 63.5
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 2.5e-280 968.8 780 63.6
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 9.6e-280 966.8 780 62.3
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.3e-279 966.5 780 63.5
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.9e-276 955.3 805 60.2
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.5e-272 942.2 783 61.7
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 9.6e-272 940.3 774 63.3
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.9e-268 928.7 780 62.3
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.8e-262 909.4 723 64.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 7.6e-261 904.0 742 63.1
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.0e-260 901.4 746 61.0
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.3e-252 876.7 790 57.1
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 2.3e-249 865.9 785 57.7
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 3.7e-247 858.6 781 58.8
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 6.6e-220 768.1 778 52.3
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 5.6e-211 738.4 548 69.3
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 2.3e-201 706.4 505 69.9
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.1e-195 687.6 539 64.6
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 8.6e-188 661.4 480 70.6
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.5e-187 660.6 770 49.5
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.3e-174 614.8 426 70.7
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.2e-168 597.8 596 54.0
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.0e-160 570.5 792 42.3
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 7.6e-160 568.5 802 41.9
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.5e-149 533.1 514 56.4
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.6e-141 506.1 398 65.3
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 5.3e-137 492.7 509 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 8.8e-116 422.2 746 35.5
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.3e-111 408.3 841 32.2
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.0e-104 384.4 441 50.3
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 3.4e-99 367.1 446 48.0
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.2e-93 348.6 390 48.2
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.7e-85 320.1 257 64.6
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.4e-84 318.5 378 48.1
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.4e-84 318.5 191 75.4
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.1e-73 280.4 393 39.2
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.6e-72 276.9 206 67.5
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 6.0e-72 276.6 219 62.1
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 5.1e-71 273.5 268 54.1
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.1e-62 245.7 762 27.6
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 6.5e-42 176.8 184 58.2
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.2e-40 172.6 322 35.1
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-39 169.1 225 41.8
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.0e-34 152.9 488 26.2
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.7e-34 152.1 161 51.6
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.4e-33 149.1 494 24.3
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 2.5e-33 148.3 114 60.5
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 7.1e-33 146.7 255 36.5
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.8e-31 142.1 83 78.3
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.8e-31 142.1 523 25.0
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.3e-30 137.9 83 77.1
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.8e-29 134.8 71 83.1
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 6.3e-29 133.7 90 74.4
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 6.3e-29 133.7 86 72.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.4e-28 132.5 138 54.3
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-28 131.3 83 74.7
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.8e-26 124.4 78 73.1
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.0e-26 124.0 92 63.0
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.9e-25 122.1 109 53.2
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 3.6e-24 117.9 109 52.3
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.1e-24 117.1 62 87.1
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-23 115.9 125 48.8
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.1e-23 114.0 79 70.9
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 7.4e-22 110.2 61 80.3
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 9.7e-22 109.8 62 82.3
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.2e-21 108.6 346 31.2
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.8e-18 97.8 55 78.2
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.9e-17 95.5 62 74.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.5e-17 95.1 82 61.0
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.2e-17 94.7 79 62.0
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.2e-17 94.7 55 74.5
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 5.5e-17 94.0 57 78.9
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.9e-15 87.8 83 56.6
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 3.9e-15 87.8 69 56.5
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.8e-15 86.7 55 69.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-14 84.7 55 67.3
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-12 79.7 60 60.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.1e-12 77.8 60 61.7
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 5.9e-11 73.9 80 47.5
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 6.1e-08 63.9 47 72.3
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.0e-08 63.5 83 44.6
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 2.3e-07 62.0 31 87.1


User provided reference genes

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