Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.7e-68 261.9 139 100.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.8e-65 251.9 139 96.4
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.3e-65 250.8 139 95.7
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.3e-65 250.8 139 95.7
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 8.3e-65 250.4 139 95.7
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.1e-64 248.1 139 95.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 2.9e-62 241.9 140 93.6
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.3e-59 232.3 139 89.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.5e-58 229.6 139 88.5
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 87.8
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 88.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 88.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 9.8e-58 226.9 139 87.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.7e-57 226.1 139 88.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 4.9e-57 224.6 139 87.1
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 6.3e-57 224.2 140 86.4
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.4e-56 223.0 142 85.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 86.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 84.9
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 85.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 85.6
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.1e-56 221.9 139 84.2
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.1e-56 221.9 139 86.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.0e-56 220.7 139 85.6
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 83.5
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.2e-55 219.9 139 84.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.6e-55 219.5 140 85.0
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-55 219.5 139 85.6
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.6e-55 219.5 139 84.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.6e-55 219.5 139 82.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 84.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 84.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.5e-55 218.0 139 84.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 4.5e-55 218.0 140 83.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 5.9e-55 217.6 143 81.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.9e-55 217.6 139 83.5
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 7.7e-55 217.2 139 83.5
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.0e-54 216.9 139 84.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.0e-54 216.9 139 84.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.3e-54 216.5 139 84.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.3e-54 215.7 139 82.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.9e-54 215.3 141 83.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.8e-54 214.9 141 82.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 8.6e-54 213.8 139 84.2
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 8.6e-54 213.8 139 79.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.1e-53 213.4 138 80.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.1
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.9e-53 212.6 141 82.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 3.3e-53 211.8 139 82.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 82.1
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 81.4
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.3e-53 211.5 143 81.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 5.6e-53 211.1 139 81.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 5.6e-53 211.1 141 80.9
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 7.2e-53 210.7 140 82.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 81.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 81.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 7.2e-53 210.7 140 80.7
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.5e-53 210.3 139 81.3
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.5e-53 210.3 143 80.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.1e-52 209.1 139 80.6
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.1e-52 209.1 140 79.3
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.8e-52 208.8 141 80.9
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.8e-52 208.8 142 80.3
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 3.6e-52 208.4 140 80.7
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 80.6
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.0e-51 206.8 139 79.9
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.4e-51 206.5 147 77.6
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 138 79.7
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 138 79.7
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.8e-51 206.1 139 79.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.8e-51 206.1 138 79.7
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 6.8e-51 204.1 138 79.7
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 8.9e-51 203.8 164 71.3
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 8.9e-51 203.8 139 80.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 8.9e-51 203.8 139 78.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 8.9e-51 203.8 139 78.4
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.9e-51 203.8 140 77.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.5e-50 203.0 138 79.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-50 202.6 149 75.8
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-50 201.4 151 75.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.4e-50 201.4 151 75.5
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 4.4e-50 201.4 138 78.3
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 5.7e-50 201.1 138 79.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.3e-49 199.9 148 75.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.7e-49 199.5 153 73.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.9e-49 198.0 139 77.7
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-48 195.7 135 79.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.4e-48 195.7 152 73.0
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 76.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.2e-48 195.3 160 68.8
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 5.4e-48 194.5 155 71.6
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-48 194.5 155 71.6
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.0e-48 194.1 139 76.3
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 7.0e-48 194.1 140 74.3
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 9.2e-48 193.7 141 76.6
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-47 193.4 144 73.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-47 191.4 144 72.9
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.7e-46 189.5 141 75.2
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.3e-46 189.1 113 90.3
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 6.6e-46 187.6 168 62.5
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 6.6e-46 187.6 173 63.0
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 8.6e-46 187.2 176 61.4
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.9e-45 186.0 113 89.4
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-45 186.0 139 71.9
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.5e-45 185.7 146 71.2
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.3e-45 184.9 139 72.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 5.6e-45 184.5 135 76.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 7.3e-45 184.1 148 69.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.2e-43 177.9 139 69.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.8e-42 174.5 137 70.8
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 6.4e-41 171.0 115 80.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 9.2e-40 167.2 140 62.9
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.8e-39 164.1 116 78.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-38 163.7 113 77.9
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-38 162.9 135 68.9
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.7e-38 162.9 169 56.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.3e-37 158.7 135 69.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.3e-37 158.7 119 73.1
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.1e-36 156.0 139 61.2
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-36 155.6 128 70.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.1e-35 152.1 113 75.2
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 4.0e-35 151.8 109 77.1
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.4e-34 148.3 137 58.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 8.3e-33 144.1 166 54.2
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.4e-32 141.4 97 78.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 2.7e-31 139.0 131 62.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 6.0e-31 137.9 132 62.1
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 7.8e-31 137.5 96 78.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.3e-30 136.0 80 93.8
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 5.1e-30 134.8 155 51.6
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 6.6e-30 134.4 112 69.6
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 9.5e-29 130.6 136 55.1
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.8e-28 129.0 119 62.2
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 3.6e-28 128.6 138 55.8
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 5.2e-27 124.8 85 75.3
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.8e-27 124.4 80 85.0
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 8.9e-27 124.0 85 75.3
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.8e-26 121.3 80 82.5
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 7.6e-26 120.9 79 84.8
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-25 120.2 80 81.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-25 118.6 76 86.8
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.5e-23 112.1 69 87.0
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.3e-22 110.2 69 81.2
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.0e-22 109.0 58 91.4
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-20 102.4 70 75.7
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.7e-17 93.2 69 76.8
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 2.2e-17 92.8 101 59.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 9.3e-16 87.4 82 59.8
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-14 84.0 72 63.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.0e-14 84.0 72 63.9
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.3e-14 82.8 57 78.9
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 3.9e-14 82.0 77 61.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 5.6e-13 78.2 131 40.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.6e-12 76.6 64 57.8
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 9.9e-10 67.4 109 45.0
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 9.9e-10 67.4 109 45.0
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-09 65.9 51 64.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-09 65.9 49 67.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 4.9e-09 65.1 51 64.7
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 4.6e-07 58.5 37 75.7
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 4.6e-07 58.5 37 75.7
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 1.7e-06 56.6 44 70.5


User provided reference genes

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