Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 2.0e-25 118.2 58 100.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 2.3e-13 78.2 58 70.7
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 4.0e-13 77.4 48 79.2
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 4.0e-13 77.4 48 79.2
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 6.8e-13 76.6 57 70.2
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 6.8e-13 76.6 46 78.3
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 8.9e-13 76.3 57 70.2
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 2.6e-12 74.7 49 69.4
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 5.8e-12 73.6 41 82.9
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 5.8e-12 73.6 52 69.2
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 7.5e-12 73.2 51 70.6
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 7.5e-12 73.2 47 72.3
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 7.5e-12 73.2 57 64.9
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 9.8e-12 72.8 54 68.5
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 1.3e-11 72.4 45 75.6
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 1.7e-11 72.0 38 84.2
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 2.2e-11 71.6 57 63.2
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 2.9e-11 71.2 50 68.0
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.9e-11 71.2 46 71.7
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 2.9e-11 71.2 38 84.2
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 2.9e-11 71.2 52 69.2
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 2.9e-11 71.2 51 68.6
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 3.7e-11 70.9 44 77.3
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 3.7e-11 70.9 44 75.0
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 4.9e-11 70.5 53 67.9
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 4.9e-11 70.5 51 68.6
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 4.9e-11 70.5 47 68.1
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 6.4e-11 70.1 49 67.3
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 8.3e-11 69.7 48 68.8
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 8.3e-11 69.7 50 70.0
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 8.3e-11 69.7 38 84.2
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.1e-10 69.3 38 84.2
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 1.4e-10 68.9 56 60.7
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 1.4e-10 68.9 39 82.1
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.4e-10 68.9 50 68.0
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.9e-10 68.6 50 66.0
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 3.2e-10 67.8 50 66.0
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 3.2e-10 67.8 38 81.6
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 3.2e-10 67.8 44 72.7
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.1e-10 67.4 47 68.1
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.1e-10 67.4 47 68.1
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 7.1e-10 66.6 50 66.0
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 7.1e-10 66.6 50 66.0
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 7.1e-10 66.6 50 64.0
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 7.1e-10 66.6 46 69.6
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 1.2e-09 65.9 37 78.4
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 1.6e-09 65.5 50 62.0
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 2.1e-09 65.1 47 70.2
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 2.7e-09 64.7 38 76.3
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 3.5e-09 64.3 36 80.6
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 4.6e-09 63.9 39 71.8
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 4.6e-09 63.9 38 76.3
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 4.6e-09 63.9 34 91.2
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 6.0e-09 63.5 48 64.6
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 1.7e-08 62.0 55 52.7
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 2.3e-08 61.6 47 63.8
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 2.3e-08 61.6 49 59.2
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 3.9e-08 60.8 43 65.1
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 6.6e-08 60.1 55 54.5
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 4.3e-07 57.4 51 52.9
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 5.6e-07 57.0 56 50.0
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 2.8e-06 54.7 44 59.1


User provided reference genes

Program Settings