Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.6e-186 656.0 342 100.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 4.7e-162 574.7 331 90.3
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.2e-159 565.8 331 89.4
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 3.0e-156 555.4 331 87.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.4e-152 542.0 331 86.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.3e-148 529.3 331 85.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.1e-113 412.5 333 65.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 6.9e-113 411.4 339 69.9
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.6e-112 407.9 325 66.8
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.1e-109 399.8 331 63.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.9e-108 395.6 332 63.6
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-107 393.7 328 61.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.5e-107 393.7 333 62.8
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 3.3e-107 392.5 330 62.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.2e-104 384.0 323 62.2
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.4e-104 382.5 331 62.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.7e-103 380.2 329 62.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 6.5e-103 378.3 330 60.9
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.5e-102 375.2 331 59.2
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.6e-101 372.1 324 59.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.3e-100 370.5 331 57.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.3e-100 369.8 332 60.8
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.3e-100 369.8 323 61.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.3e-99 365.5 324 59.3
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.7e-99 365.2 324 59.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 5.7e-99 365.2 331 58.9
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.8e-98 362.8 383 53.3
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.8e-98 362.8 331 59.8
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.1e-97 359.0 330 57.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.2e-96 357.5 330 57.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-96 357.1 330 57.0
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.6e-96 356.3 339 57.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.5e-96 355.5 332 59.3
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.0e-95 354.4 332 58.4
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 6.5e-95 351.7 331 58.0
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-94 350.9 331 58.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.5e-94 349.7 331 57.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.2e-94 349.4 330 57.0
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.7e-93 346.3 331 56.2
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 7.9e-93 344.7 332 57.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 7.9e-93 344.7 332 57.2
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.3e-92 343.2 331 56.5
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.5e-91 340.5 323 57.3
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.7e-90 335.9 334 54.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 4.8e-90 335.5 329 56.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.4e-89 333.2 334 54.5
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-87 325.9 339 55.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 6.5e-87 325.1 338 53.0
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.5e-86 323.2 333 55.0
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 5.5e-86 322.0 338 54.1
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 9.4e-86 321.2 334 53.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.2e-85 320.9 331 53.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.7e-85 319.7 331 55.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 6.1e-85 318.5 336 53.6
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 5.1e-84 315.5 388 46.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-83 314.3 331 54.7
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.5e-83 313.9 331 54.4
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.5e-83 313.9 331 50.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 4.4e-83 312.4 331 54.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 4.4e-83 312.4 333 51.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-82 310.5 332 53.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.2e-82 310.1 338 54.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-82 309.7 341 52.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.4e-81 306.6 331 53.5
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 9.1e-81 304.7 331 51.4
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 9.1e-81 304.7 331 50.8
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 7.7e-80 301.6 333 52.3
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.3e-79 300.8 268 61.6
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 8.5e-79 298.1 319 53.3
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.9e-78 297.0 388 45.4
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 9.4e-78 294.7 331 49.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.6e-77 293.9 319 52.7
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.7e-77 293.1 331 51.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.6e-77 292.7 331 51.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.7e-77 292.4 326 53.4
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 6.1e-77 292.0 404 44.3
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.0e-76 291.2 331 47.4
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.8e-76 288.1 329 50.8
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.8e-76 288.1 278 55.4
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.1e-75 287.7 331 47.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.4e-75 285.8 278 54.7
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 5.7e-75 285.4 332 49.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 8.2e-74 281.6 311 53.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.4e-73 280.8 331 46.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.6e-72 277.3 328 48.5
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.0e-71 272.3 333 48.9
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 6.5e-71 271.9 331 47.4
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 6.5e-71 271.9 388 44.8
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.9e-70 270.4 324 50.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.9e-70 270.4 275 53.1
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.6e-69 266.2 331 45.9
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-67 261.2 331 48.0
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.8e-66 255.8 323 49.5
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.8e-65 253.8 327 45.3
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 5.3e-65 252.3 277 49.1
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 4.5e-64 249.2 373 42.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.5e-64 249.2 333 46.8
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-63 247.7 336 45.2
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.3e-63 247.7 324 44.4
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.0e-63 245.7 395 41.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.5e-62 244.2 264 50.0
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 6.1e-61 238.8 338 45.0
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 8.0e-61 238.4 340 43.2
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.3e-60 236.9 337 45.4
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.8e-58 229.9 257 49.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.3e-58 228.4 307 45.3
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.1e-57 226.5 331 41.7
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.0e-55 221.5 353 40.5
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.0e-55 221.5 315 44.8
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.9e-55 219.9 364 40.1
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.8e-55 219.5 256 48.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.6e-53 214.2 310 43.2
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.6e-53 214.2 155 69.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.1e-53 213.8 328 42.4
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.1e-53 213.8 328 42.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.8e-53 213.4 331 41.1
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 8.0e-53 211.8 305 41.6
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.4e-52 211.1 329 39.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.5e-51 207.6 331 40.2
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 7.5e-51 205.3 308 40.9
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-50 204.5 332 39.8
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 6.3e-50 202.2 333 39.6
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 6.3e-50 202.2 332 38.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.4e-49 201.1 295 41.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 5.4e-49 199.1 197 54.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-48 198.0 294 39.5
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.7e-48 196.8 264 42.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.5e-48 196.1 362 37.6
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.3e-46 189.9 264 41.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.3e-46 189.5 307 40.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 3.6e-45 186.4 332 39.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.8e-44 182.2 312 38.5
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 6.8e-44 182.2 175 53.7
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-43 181.0 305 37.4
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.5e-43 181.0 320 39.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.8e-43 179.1 210 48.6
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 5.8e-43 179.1 146 63.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.9e-42 176.8 176 55.1
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 9.2e-41 171.8 142 63.4
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 9.2e-41 171.8 152 61.8
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-40 171.0 279 41.6
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.9e-39 166.4 371 33.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 7.3e-38 162.2 312 35.3
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 8.0e-37 158.7 328 36.3
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.4e-36 157.9 159 50.9
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.9e-36 155.2 210 44.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.6e-35 153.7 225 41.3
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.4e-35 153.3 151 58.3
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.5e-35 152.1 164 52.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.8e-35 151.8 164 52.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 8.3e-34 148.7 264 40.9
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 7.8e-32 142.1 241 37.3
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.3e-30 135.6 374 29.4
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-29 134.4 135 57.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.1e-28 131.7 112 59.8
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-28 131.0 136 56.6
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 6.8e-28 129.0 130 56.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.5e-27 127.9 233 40.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.4e-27 126.7 187 44.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.4e-25 121.3 292 32.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.7e-24 117.1 250 32.4
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.6e-21 107.8 101 58.4
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.3e-18 98.2 324 29.9
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.7e-18 97.8 214 29.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 6.4e-18 95.9 250 33.2
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 7.1e-17 92.4 126 40.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 7.1e-17 92.4 221 33.0
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 7.1e-17 92.4 126 40.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 7.1e-17 92.4 221 33.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.1e-17 92.4 48 87.5
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.5e-16 90.1 195 31.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.6e-16 89.7 280 28.9
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 5.1e-15 86.3 206 31.6
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-14 85.1 94 51.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 7.3e-14 82.4 84 54.8
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 2.9e-10 70.5 100 54.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-09 67.4 60 58.3
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-08 64.7 50 64.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-08 64.3 54 53.7
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.6e-07 59.3 128 34.4
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 9.6e-06 55.5 79 43.0


User provided reference genes

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