Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 5.5e-148 528.9 262 100.0
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 5.1e-85 319.7 262 63.4
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 4.4e-81 306.6 262 59.9
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.8e-80 303.5 262 60.7
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.7e-72 278.1 246 59.3
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.8e-66 258.1 218 61.0
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 8.2e-59 232.6 266 48.9
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.1e-55 222.2 251 49.8
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.6e-54 218.4 224 52.7
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.6e-51 208.4 257 45.9
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.8e-48 197.2 253 45.8
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.4e-47 195.3 253 45.5
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.9e-47 194.9 253 45.5
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 6.1e-46 189.9 263 42.2
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 3.0e-45 187.6 258 44.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 3.9e-45 187.2 228 47.4
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 8.8e-45 186.0 262 42.7
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.5e-44 185.3 230 47.8
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.5e-44 184.5 236 46.6
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 7.4e-44 183.0 233 46.8
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.8e-43 181.0 259 40.9
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 3.8e-40 170.6 245 40.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 5.0e-40 170.2 226 42.9
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 8.5e-40 169.5 247 39.7
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 8.5e-40 169.5 247 39.7
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 8.5e-40 169.5 108 75.9
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.2e-39 167.2 247 39.3
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 7.2e-39 166.4 247 39.3
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 9.4e-39 166.0 262 37.0
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 6.1e-38 163.3 264 39.0
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.8e-37 161.8 259 39.8
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.8e-37 161.8 255 39.6
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.8e-37 161.8 231 42.0
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 3.0e-37 161.0 236 38.1
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 3.9e-37 160.6 255 39.2
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.1e-37 160.2 235 43.4
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 6.7e-37 159.8 247 39.7
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.8e-37 159.5 247 39.7
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.5e-36 158.7 267 37.5
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 7.4e-36 156.4 227 41.0
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 9.7e-36 156.0 220 44.5
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 2.2e-35 154.8 245 39.2
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 8.2e-35 152.9 176 46.6
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.8e-34 151.8 248 38.7
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.4e-34 151.4 251 36.7
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.1e-34 151.0 166 48.8
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 4.1e-34 150.6 220 42.7
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 7.0e-34 149.8 220 42.3
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 7.0e-34 149.8 245 38.4
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 2.6e-33 147.9 244 37.3
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.0e-32 146.0 253 36.4
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-32 145.6 212 39.6
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.2e-32 144.8 242 36.0
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.2e-32 144.8 204 39.7
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 5.0e-32 143.7 258 32.9
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 6.5e-32 143.3 215 40.9
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.9e-31 141.7 234 39.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 2.5e-31 141.4 198 42.4
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.5e-31 141.4 246 35.0
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 4.2e-31 140.6 270 33.0
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 7.2e-31 139.8 169 46.7
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 3.6e-30 137.5 217 37.3
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 6.1e-30 136.7 262 34.4
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 6.1e-30 136.7 242 31.8
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.8e-29 135.2 255 31.8
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 6.7e-29 133.3 259 34.4
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 8.8e-29 132.9 252 35.7
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 2.0e-28 131.7 230 33.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 3.3e-28 131.0 216 35.2
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 4.4e-28 130.6 228 38.2
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.7e-28 130.2 250 33.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.8e-27 127.1 200 37.5
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 8.2e-27 126.3 226 38.9
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 1.4e-26 125.6 233 34.3
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 4.1e-26 124.0 227 34.4
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 4.1e-26 124.0 213 35.2
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 9.1e-26 122.9 211 35.1
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.2e-25 122.5 171 39.8
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.6e-25 122.1 209 35.9
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.5e-25 120.6 245 31.8
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 5.9e-25 120.2 262 31.7
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.9e-25 120.2 263 32.3
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 2.9e-24 117.9 262 31.3
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 8.5e-24 116.3 181 39.8
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 8.5e-24 116.3 240 30.8
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 8.5e-24 116.3 204 38.7
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.1e-23 115.9 235 31.5
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.9e-23 115.2 208 35.6
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 2.5e-23 114.8 184 38.6
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.5e-23 114.8 262 31.3
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 3.2e-23 114.4 184 38.6
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 5.5e-23 113.6 233 31.3
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 9.4e-23 112.8 194 38.1
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 9.4e-23 112.8 246 29.7
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.2e-22 112.5 184 39.1
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.6e-22 112.1 208 33.2
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 2.1e-22 111.7 207 35.3
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.1e-22 111.7 212 34.0
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 2.7e-22 111.3 184 38.6
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 4.7e-22 110.5 251 31.1
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 4.7e-22 110.5 219 30.6
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 3.0e-21 107.8 194 33.5
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.5e-20 105.5 251 29.9
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 2.6e-20 104.8 226 31.9
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 7.5e-20 103.2 235 29.4
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 9.8e-20 102.8 226 34.1
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 9.8e-20 102.8 230 28.7
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 9.8e-20 102.8 235 29.4
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 9.8e-20 102.8 223 34.1
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.8e-19 100.5 144 43.8
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.1e-18 99.4 190 30.0
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 2.4e-18 98.2 216 30.1
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 2.4e-18 98.2 156 38.5
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 4.1e-18 97.4 216 28.7
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 7.0e-18 96.7 255 26.3
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 1.2e-17 95.9 202 32.7
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.7e-17 94.7 218 28.0
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.7e-16 92.0 211 26.5
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.5e-16 90.1 238 26.9
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.1e-15 89.4 263 24.7
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.1e-15 89.4 225 26.2
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 9.5e-15 86.3 94 46.8
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.6e-14 85.5 207 30.4
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.7e-14 84.7 185 27.6
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 2.7e-14 84.7 250 29.2
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 4.7e-14 84.0 86 45.3
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.0e-13 82.8 177 31.1
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.8e-13 82.0 232 26.7
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.3e-13 81.6 225 27.1
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 3.0e-13 81.3 69 62.3
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 5.2e-13 80.5 220 26.4
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 5.2e-13 80.5 203 27.6
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 6.8e-13 80.1 89 47.2
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 8.8e-13 79.7 252 26.2
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 8.8e-13 79.7 231 26.8
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 2.6e-12 78.2 202 28.2
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 7.5e-12 76.6 100 40.0
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 2.8e-11 74.7 234 24.8
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 3.1e-10 71.2 67 52.2
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 5.4e-10 70.5 86 43.0
Peaxi162Scf00450g00074 Petunia axillaris HOM05D004255 ORTHO05D004815 1.2e-09 69.3 51 62.7
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 1.6e-09 68.9 193 26.9
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 7.7e-09 66.6 56 58.9
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.0e-08 66.2 222 25.7
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-08 65.9 119 34.5
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.3e-08 65.1 217 25.8
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 1.1e-07 62.8 69 42.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.1e-07 62.8 216 25.0
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 3.3e-07 61.2 221 25.8
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.3e-07 61.2 179 27.4
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 3.3e-07 61.2 196 24.5
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 4.3e-07 60.8 249 23.3
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.6e-07 60.5 78 39.7
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 7.3e-07 60.1 220 24.5
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 1.6e-06 58.9 69 39.1
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 2.1e-06 58.5 224 24.6
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.6e-06 57.8 249 22.9
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 4.7e-06 57.4 99 29.3
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 6.1e-06 57.0 217 23.5
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 8.0e-06 56.6 221 24.4


User provided reference genes

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