Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 0.0e+00 2852.4 1569 100.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 0.0e+00 2410.2 1586 82.5
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 0.0e+00 2319.3 1586 79.4
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 2129.8 1578 73.8
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 2114.3 1609 72.2
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 0.0e+00 2061.2 1586 75.5
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 0.0e+00 2038.8 1323 82.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 9.9e-300 1034.2 1625 45.1
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 3.2e-290 1002.7 1721 42.6
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 4.2e-274 949.1 1622 43.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.0e-248 864.8 1612 40.9
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 8.8e-248 861.7 1692 40.5
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 1.0e-243 848.2 1601 41.5
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 6.1e-241 839.0 1628 39.7
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.7e-238 829.7 1641 39.0
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.1e-237 828.2 1626 40.2
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.7e-235 820.8 1612 39.1
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 3.6e-233 813.1 1722 37.7
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 4.7e-233 812.8 1646 40.8
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.3e-230 804.7 1635 39.3
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.9e-229 800.8 1638 39.3
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 3.2e-229 800.0 1647 38.9
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 7.0e-229 798.9 1638 39.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 7.0e-229 798.9 1602 41.1
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 9.2e-229 798.5 1614 38.9
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.2e-228 798.1 1643 39.3
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.6e-227 792.3 1634 39.8
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.1e-226 791.6 1620 38.7
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.9e-221 774.2 1634 38.4
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.4e-221 772.7 1645 38.2
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.2e-220 771.5 1636 38.3
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.5e-220 770.0 1615 37.8
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 1.3e-219 768.1 1636 38.4
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 6.6e-219 765.8 1640 39.1
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.3e-218 762.3 1631 38.4
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 7.3e-218 762.3 1639 37.4
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.2e-217 759.2 1639 37.4
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 5.2e-216 756.1 1639 38.6
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.4e-215 753.4 1623 36.8
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.4e-215 753.4 1622 37.9
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.9e-215 751.9 1623 37.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.1e-213 748.4 1623 38.1
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.9e-213 747.7 1645 40.1
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 2.4e-213 747.3 1620 40.6
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.6e-211 738.8 1640 37.9
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 5.6e-210 736.1 1661 37.4
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 6.2e-209 732.6 1685 36.0
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 8.1e-209 732.3 1627 37.1
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.1e-208 731.9 1643 38.1
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.8e-208 731.1 1664 37.8
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 2.4e-208 730.7 1673 36.0
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 5.4e-205 719.5 1284 41.0
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 1.6e-204 718.0 1670 37.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.3e-201 708.4 1684 36.8
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.9e-197 694.5 1633 36.3
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 7.8e-196 689.1 1655 36.8
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 2.0e-191 674.5 1651 35.8
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 8.4e-190 669.1 1605 35.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.9e-189 667.9 1662 36.0
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.4e-189 667.5 1668 36.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.2e-188 665.2 1681 38.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.8e-179 634.8 1622 35.4
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 3.3e-178 630.6 1621 35.2
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 5.7e-178 629.8 1620 35.6
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 3.2e-173 614.0 1537 36.1
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.2e-173 614.0 1643 34.2
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 4.2e-173 613.6 1622 35.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.1e-172 611.3 1674 34.5
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.6e-172 610.1 1615 34.4
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.6e-169 601.7 1606 33.8
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 4.8e-169 600.1 1615 33.9
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.1e-168 599.0 1644 33.6
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.7e-166 591.7 1202 39.0
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.0e-163 582.4 1621 34.4
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 3.9e-163 580.5 1630 34.2
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 6.7e-163 579.7 1605 33.9
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.3e-162 577.4 1615 35.9
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.9e-157 561.6 1605 35.5
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 9.4e-157 559.3 1662 33.8
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 8.8e-155 552.7 1458 35.3
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.5e-149 534.6 1626 31.5
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 4.2e-149 533.9 1640 34.0
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 2.3e-147 528.1 1611 32.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.4e-146 523.9 1767 33.7
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 3.7e-145 520.8 1622 32.5
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 5.5e-141 506.9 1634 31.8
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.2e-140 505.8 1695 31.5
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 3.0e-139 501.1 1614 33.6
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.4e-136 491.5 1626 32.9
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 2.9e-134 484.6 1593 31.2
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.4e-133 479.6 1630 31.0
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 3.6e-132 477.6 1604 31.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.0e-131 476.1 1411 32.5
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.2e-130 472.6 788 47.2
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.2e-127 462.6 1754 30.8
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.0e-123 449.5 1759 30.6
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 2.0e-122 445.3 1608 29.9
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.7e-121 442.2 1222 36.3
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.2e-119 436.0 609 45.3
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.9e-118 431.0 1604 31.2
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.8e-116 424.9 1601 30.1
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.2e-114 419.5 1601 29.8
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 7.5e-114 416.8 1629 29.3
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 2.2e-113 415.2 1415 31.6
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.9e-112 412.1 1611 29.4
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.0e-111 407.1 1634 29.0
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.8e-108 398.3 1611 29.2
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-104 386.3 1613 28.3
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.1e-104 384.4 1620 28.0
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 7.1e-104 383.6 1614 28.3
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.7e-102 379.0 1606 28.5
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.0e-102 378.3 1605 28.5
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.6e-94 350.1 688 39.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 3.3e-93 348.2 1626 27.8
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.2e-92 346.3 1506 30.9
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.4e-91 342.8 1637 28.0
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 8.9e-91 340.1 1623 27.8
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 3.2e-88 331.6 1625 27.9
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.5e-85 322.0 956 32.5
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 4.3e-85 321.2 1614 27.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.4e-80 305.4 1603 27.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 6.0e-79 300.8 1694 27.7
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.9e-77 295.8 1601 26.4
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.3e-75 287.7 334 52.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.4e-67 263.1 480 41.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 2.9e-57 228.8 1567 26.5
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 3.9e-54 218.4 1602 25.0
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 6.9e-51 207.6 193 61.1
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 6.7e-46 191.0 1454 25.4
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.8e-44 185.7 470 34.3
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-43 183.7 204 53.9
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.3e-41 176.8 1619 23.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.1e-39 169.5 822 27.4
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.0e-38 165.6 401 34.4
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.8e-36 159.1 1295 25.9
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.4e-35 156.8 203 46.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.4e-35 156.8 1305 26.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 5.3e-35 154.8 676 30.2
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.6e-29 136.0 1554 22.9
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.7e-29 134.8 88 78.4
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.7e-28 132.1 215 42.8
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.8e-25 122.1 377 33.7
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 8.5e-25 120.9 582 29.0
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.6e-21 109.4 178 43.8
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.2e-16 92.4 138 47.8
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 7.2e-16 91.3 273 34.4
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.6e-15 90.1 528 30.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.6e-15 90.1 71 69.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.4e-14 87.0 493 28.0
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.0e-14 85.9 491 28.1
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.0e-14 85.9 96 47.9
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 5.2e-14 85.1 217 36.4
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 6.8e-14 84.7 141 41.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 5.7e-13 81.6 451 28.4
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.9e-12 78.6 141 41.1
CAN.G181.47 Capsicum annuum HOM05D002907 ORTHO05D005554 1.6e-10 73.6 63 68.3
CAN.G1640.15 Capsicum annuum HOM05D000493 ORTHO05D015024 4.5e-10 72.0 80 55.0
CAN.G834.10 Capsicum annuum HOM05D004650 ORTHO05D005715 7.7e-10 71.2 92 50.0
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 7.7e-10 71.2 505 32.9
CAN.G419.24 Capsicum annuum HOM05D002907 ORTHO05D005554 5.6e-08 65.1 56 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.0e-06 60.8 799 25.4
CAN.G1578.14 Capsicum annuum HOM05D038380 ORTHO05D015024 5.2e-06 58.5 80 50.0
CAN.G1298.39 Capsicum annuum HOM05D038380 ORTHO05D015024 6.8e-06 58.2 78 52.6


User provided reference genes

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