Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 2.8e-255 884.8 456 100.0
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.6e-226 789.3 523 81.1
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.4e-225 786.2 523 80.7
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.4e-225 786.2 523 80.7
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 3.2e-222 775.0 523 79.9
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 4.6e-221 771.2 523 79.5
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 5.0e-220 767.7 523 79.3
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 1.1e-201 706.8 525 73.0
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 7.6e-200 700.7 535 73.8
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 3.2e-198 695.3 526 71.3
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.3e-196 689.9 525 70.5
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 2.3e-196 689.1 525 71.8
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 3.0e-196 688.7 526 71.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 8.7e-196 687.2 525 71.4
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 8.7e-196 687.2 525 70.7
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 1.1e-195 686.8 525 71.4
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 8.1e-194 680.6 526 69.2
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-193 680.2 526 69.4
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-193 680.2 526 69.6
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.4e-193 679.9 525 70.1
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.4e-193 679.9 526 70.0
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.4e-193 679.1 526 69.6
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.0e-193 678.3 524 69.7
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 4.0e-193 678.3 524 69.7
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 9.0e-193 677.2 526 70.0
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 9.0e-193 677.2 523 69.4
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 9.0e-193 677.2 523 69.4
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.0e-192 676.0 526 69.0
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 5.8e-192 674.5 525 69.3
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.3e-191 673.3 527 68.7
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 1.7e-191 672.9 526 68.3
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.7e-191 672.9 522 69.9
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 2.2e-191 672.5 521 69.5
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 4.9e-191 671.4 526 67.9
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 4.2e-190 668.3 523 68.3
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 2.7e-189 665.6 524 67.6
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 6.0e-189 664.5 526 68.3
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 3.0e-188 662.1 524 67.4
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 3.9e-188 661.8 526 68.1
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 5.1e-188 661.4 526 68.1
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 1.1e-187 660.2 524 68.1
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.5e-187 659.8 525 68.0
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.5e-187 659.8 525 68.0
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 4.3e-187 658.3 526 67.9
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 4.3e-187 658.3 524 68.3
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 9.6e-187 657.1 523 67.1
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.3e-186 656.8 526 67.7
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.3e-186 656.8 527 67.6
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 2.1e-186 656.0 509 69.7
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.8e-186 655.6 524 67.7
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 6.2e-186 654.4 522 67.0
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 6.2e-186 654.4 534 66.3
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 6.2e-186 654.4 531 67.4
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.1e-186 654.1 523 66.9
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.1e-185 653.7 524 67.7
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 4.0e-185 651.7 526 67.5
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 6.9e-185 651.0 517 67.3
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 9.0e-185 650.6 527 67.2
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 9.0e-185 650.6 527 66.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-184 650.2 526 66.7
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.6e-184 649.0 525 66.9
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 4.5e-184 648.3 527 67.2
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 5.8e-184 647.9 526 66.7
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 7.6e-184 647.5 527 66.6
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.3e-183 646.7 526 66.5
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 2.2e-183 646.0 524 66.8
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.2e-183 646.0 524 66.8
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 4.9e-183 644.8 513 68.8
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 1.4e-182 643.3 526 66.5
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.4e-182 642.5 486 71.6
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 4.2e-182 641.7 526 66.2
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 4.2e-182 641.7 511 67.5
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 5.5e-182 641.3 527 66.8
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 5.5e-182 641.3 523 65.0
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 7.1e-182 641.0 526 66.3
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 7.1e-182 641.0 508 67.9
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 9.3e-182 640.6 526 66.0
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 1.6e-181 639.8 467 72.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.6e-181 639.8 563 63.2
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 2.7e-181 639.0 511 68.9
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 4.6e-181 638.3 526 66.0
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 1.0e-180 637.1 522 64.8
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.0e-180 637.1 526 66.0
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 5.1e-180 634.8 502 67.5
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 6.7e-180 634.4 502 67.5
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.5e-179 633.3 522 64.9
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.9e-179 632.9 513 68.0
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 5.6e-179 631.3 511 66.3
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 5.6e-179 631.3 514 67.3
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.6e-178 629.8 537 64.6
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 1.6e-178 629.8 511 65.9
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 2.1e-178 629.4 522 65.1
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 1.8e-177 626.3 523 66.2
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 5.3e-177 624.8 525 64.4
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 3.4e-176 622.1 527 64.1
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 7.6e-176 620.9 527 63.9
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 1.0e-175 620.5 523 63.9
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 2.2e-175 619.4 526 64.1
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.9e-175 619.0 527 63.4
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 6.5e-175 617.8 527 63.2
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 8.4e-175 617.5 526 63.9
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 1.1e-174 617.1 526 64.1
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 1.1e-174 617.1 526 64.1
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.4e-174 616.7 525 63.4
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 3.2e-174 615.5 526 64.3
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 7.1e-174 614.4 500 67.0
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 3.5e-173 612.1 496 71.2
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 6.0e-173 611.3 527 63.0
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 3.3e-171 605.5 521 63.9
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.4e-166 590.1 612 56.4
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.1e-165 586.3 492 66.5
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.6e-162 576.6 490 62.9
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 3.7e-162 575.5 519 62.0
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.4e-160 568.9 490 62.2
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 3.8e-159 565.5 522 62.5
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.4e-153 547.0 482 63.1
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 2.6e-152 542.7 477 63.5
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 1.0e-148 530.8 490 65.3
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 3.3e-147 525.8 464 61.9
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 1.0e-143 514.2 823 41.8
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 1.5e-142 510.4 344 79.9
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 1.0e-135 487.6 374 72.2
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 1.8e-132 476.9 500 53.4
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 8.3e-130 468.0 487 54.0
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.2e-128 464.2 471 53.9
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 2.1e-125 453.4 504 51.4
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 2.3e-108 396.7 252 84.5
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 1.3e-106 391.0 231 90.0
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 9.2e-105 384.8 401 55.6
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.9e-98 363.2 257 76.3
CAN.G411.104 Capsicum annuum HOM05D002370 ORTHO05D003878 8.3e-98 361.7 256 78.1
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 3.5e-96 356.3 235 76.2
Haze_10320 Corylus avellana HOM05D002370 ORTHO05D003878 3.3e-94 349.7 257 73.2
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 5.6e-94 349.0 236 74.2
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 6.2e-93 345.5 257 71.6
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 4.9e-90 335.9 215 76.7
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 1.6e-88 330.9 242 69.4
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.8e-85 320.1 233 74.2
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 3.6e-85 319.7 238 73.1
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 5.8e-83 312.4 566 36.0
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 1.6e-80 304.3 155 99.4
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 4.3e-78 296.2 505 39.2
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 1.8e-76 290.8 497 39.0
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 2.9e-74 283.5 212 74.1
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 9.3e-73 278.5 170 80.6
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 3.5e-72 276.6 526 36.5
CAN.G411.96 Capsicum annuum HOM05D002370 ORTHO05D003878 9.6e-70 268.5 206 72.8
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.2e-56 224.9 132 88.6
CAN.G12816.1 Capsicum annuum HOM05D002370 ORTHO05D003878 7.4e-54 215.7 118 94.9
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 2.8e-45 187.2 465 30.8
Actinidia17531 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.7e-42 177.9 155 66.5
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.2e-41 172.6 128 69.5
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 2.6e-22 110.9 57 93.0
Thecc.06G048300 Theobroma cacao HOM05D002370 ORTHO05D037785 3.7e-21 107.1 133 50.4
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 1.1e-20 105.5 59 86.4
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.4e-20 105.1 176 38.6
Thecc.01G281900 Theobroma cacao HOM05D002370 ORTHO05D037785 1.4e-20 105.1 126 52.4
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 2.4e-20 104.4 172 32.6
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 4.1e-20 103.6 66 80.3
TAR381G0014 Trochodendron aralioides HOM05D002370 ORTHO05D414920 2.7e-19 100.9 224 38.4
CAN.G9920.1 Capsicum annuum HOM05D002370 ORTHO05D005166 1.9e-17 94.7 47 95.7
PSO017G1105 Papaver somniferum HOM05D000352 ORTHO05D000260 5.7e-14 83.2 114 44.7
FAN15G0843 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.8e-12 78.2 88 50.0
CAN.G411.94 Capsicum annuum HOM05D009846 ORTHO05D000368 1.2e-08 65.5 33 93.9
CAN.G1164.5 Capsicum annuum HOM05D009846 ORTHO05D002175 3.6e-08 63.9 42 73.8
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 2.3e-07 61.2 49 61.2
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 2.3e-07 61.2 37 78.4
Lsat_1_v5_gn_5_137761 Lactuca sativa HOM05D002370 ORTHO05D020284 4.4e-06 57.0 32 81.2


User provided reference genes

Program Settings