Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 1.1e-130 470.7 386 100.0
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 4.0e-77 292.7 395 73.4
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 3.8e-75 286.2 394 76.4
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 9.3e-66 255.0 393 73.0
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 2.5e-63 246.9 472 63.8
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.4e-48 198.0 198 73.7
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 7.4e-31 139.0 373 52.0
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.8e-16 91.3 87 85.1
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 1.2e-15 88.6 142 58.5
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 2.6e-15 87.4 172 52.3
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 7.5e-15 85.9 94 72.3
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 9.8e-15 85.5 131 58.8
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.3e-14 85.1 90 77.8
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 2.8e-14 84.0 173 50.9
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 8.3e-14 82.4 133 60.2
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 8.3e-14 82.4 142 54.2
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.1e-13 82.0 142 59.2
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 1.4e-13 81.6 88 76.1
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 1.8e-13 81.3 87 79.3
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-13 81.3 93 69.9
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-13 81.3 93 69.9
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.8e-13 81.3 93 69.9
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 1.8e-13 81.3 84 78.6
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 7.0e-13 79.3 82 76.8
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 9.1e-13 79.0 86 77.9
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.2e-12 78.6 108 64.8
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.2e-12 78.6 160 49.4
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.6e-12 78.2 159 52.2
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 2.0e-12 77.8 96 68.8
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 2.7e-12 77.4 97 73.2
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 2.7e-12 77.4 82 74.4
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 3.5e-12 77.0 88 73.9
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 4.5e-12 76.6 113 61.9
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 4.5e-12 76.6 87 77.0
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 4.5e-12 76.6 95 70.5
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 5.9e-12 76.3 68 58.8
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 1.0e-11 75.5 156 50.0
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.0e-11 75.5 126 57.9
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 1.0e-11 75.5 92 72.8
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.3e-11 75.1 150 53.3
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.7e-11 74.7 95 74.7
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.7e-11 74.7 97 70.1
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 2.3e-11 74.3 88 75.0
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 2.3e-11 74.3 92 71.7
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 2.9e-11 73.9 86 75.6
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 3.8e-11 73.6 93 62.4
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.8e-11 73.6 136 57.4
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 5.0e-11 73.2 85 78.8
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 5.0e-11 73.2 91 74.7
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 5.0e-11 73.2 131 58.0
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.0e-11 73.2 131 58.0
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 1.1e-10 72.0 85 75.3
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.5e-10 71.6 108 61.1
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 1.5e-10 71.6 85 77.6
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 1.9e-10 71.2 126 57.9
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 2.5e-10 70.9 130 54.6
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 2.5e-10 70.9 122 62.3
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 2.5e-10 70.9 95 70.5
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 3.3e-10 70.5 169 49.1
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 5.5e-10 69.7 83 77.1
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 7.2e-10 69.3 168 44.6
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 9.5e-10 68.9 95 70.5
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 9.5e-10 68.9 95 70.5
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 9.5e-10 68.9 122 55.7
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 9.5e-10 68.9 149 51.0
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 1.2e-09 68.6 92 69.6
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 1.2e-09 68.6 92 69.6
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 1.6e-09 68.2 98 68.4
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 1.6e-09 68.2 130 54.6
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 1.6e-09 68.2 130 54.6
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.4e-08 65.1 160 46.2
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 3.0e-08 63.9 39 71.8
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 4.0e-08 63.5 184 48.4
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 4.0e-08 63.5 37 78.4
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 6.8e-08 62.8 85 72.9
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.9e-08 62.4 85 71.8
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 1.2e-07 62.0 84 46.4
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.5e-07 61.6 96 68.8
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 1.5e-07 61.6 85 68.2
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 2.0e-07 61.2 152 49.3
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 3.4e-07 60.5 85 68.2
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 7.5e-07 59.3 124 54.0
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 1.7e-06 58.2 84 45.2
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 1.7e-06 58.2 171 47.4
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 2.2e-06 57.8 36 66.7
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 2.2e-06 57.8 119 51.3


User provided reference genes

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