Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 1.1e-92 343.6 213 100.0
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 4.5e-86 321.6 213 93.9
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 2.5e-84 315.8 213 93.0
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 4.5e-78 295.0 224 77.7
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 4.1e-71 271.9 213 76.5
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.5e-70 270.0 213 76.5
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 3.2e-68 262.3 170 95.9
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 5.7e-65 251.5 212 67.0
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 5.7e-65 251.5 213 68.1
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.3e-64 250.4 161 87.6
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.7e-64 250.0 213 65.7
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.8e-64 249.2 213 67.6
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 3.7e-64 248.8 213 66.2
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 5.3e-63 245.0 221 64.7
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.2e-62 243.8 213 65.7
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 2.0e-62 243.0 211 64.9
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 2.6e-62 242.7 213 66.2
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 2.6e-62 242.7 214 65.9
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 3.4e-62 242.3 213 64.3
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 5.9e-62 241.5 213 66.7
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 5.9e-62 241.5 213 63.8
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.4e-60 236.9 211 64.0
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 3.2e-60 235.7 213 64.3
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 9.4e-60 234.2 197 64.5
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 9.4e-60 234.2 213 64.3
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.6e-59 233.4 213 63.8
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.8e-58 229.9 213 62.0
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.8e-58 229.9 215 61.9
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 5.1e-58 228.4 212 63.7
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 5.1e-58 228.4 217 61.3
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 5.1e-58 228.4 213 62.9
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 8.8e-58 227.6 214 61.7
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 1.1e-57 227.3 215 61.4
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 3.3e-57 225.7 224 58.9
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 3.3e-57 225.7 209 61.7
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 4.4e-57 225.3 215 60.5
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.3e-56 223.8 217 61.8
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.7e-56 223.4 213 60.6
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 2.2e-56 223.0 214 61.7
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 3.7e-56 222.2 177 66.1
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 5.3e-55 218.4 213 60.6
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 5.3e-55 218.4 212 58.5
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 7.0e-55 218.0 212 59.4
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 7.0e-55 218.0 209 59.3
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 7.0e-55 218.0 169 69.2
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 7.0e-55 218.0 210 59.5
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 9.1e-55 217.6 212 57.1
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 3.5e-54 215.7 213 57.3
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 5.9e-54 214.9 173 67.1
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 7.7e-54 214.5 226 55.3
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.7e-53 213.4 217 58.5
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 2.9e-53 212.6 213 57.7
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 2.5e-52 209.5 213 57.7
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 3.2e-52 209.1 215 58.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 4.2e-52 208.8 213 58.7
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 5.5e-52 208.4 169 65.1
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 7.2e-52 208.0 197 62.4
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 9.4e-52 207.6 212 55.7
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 9.4e-52 207.6 236 56.8
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 2.1e-51 206.5 214 58.4
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.7e-51 206.1 213 55.4
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 2.7e-51 206.1 214 54.7
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 3.6e-51 205.7 209 59.3
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 8.0e-51 204.5 213 54.9
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 1.0e-50 204.1 213 55.9
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.4e-50 203.8 214 54.7
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 9.7e-49 197.6 213 58.7
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 2.2e-48 196.4 208 54.8
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.7e-48 195.7 219 55.7
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 4.8e-48 195.3 156 71.8
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.1e-47 194.1 207 53.6
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 1.4e-47 193.7 174 61.5
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 4.1e-47 192.2 213 59.6
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 5.9e-46 188.3 256 48.8
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 8.0e-43 177.9 145 66.9
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 1.4e-42 177.2 214 50.9
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 1.8e-42 176.8 203 51.7
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 3.4e-41 172.6 162 60.5
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 5.7e-41 171.8 146 63.7
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 9.8e-41 171.0 159 62.3
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 9.8e-41 171.0 157 62.4
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 4.8e-40 168.7 150 63.3
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 6.3e-40 168.3 216 50.9
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.8e-39 166.8 161 57.1
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 4.1e-39 165.6 204 51.0
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.6e-38 163.7 214 48.1
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 2.0e-38 163.3 150 62.0
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 2.7e-38 162.9 213 58.7
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 3.8e-37 159.1 213 47.4
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 5.0e-37 158.7 213 47.4
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.0e-37 158.7 146 60.3
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 8.5e-37 157.9 156 58.3
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 8.5e-37 157.9 144 61.1
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.2e-36 156.0 194 46.9
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 7.2e-36 154.8 157 58.6
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 3.6e-35 152.5 216 49.1
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 6.1e-35 151.8 174 61.5
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.4e-34 150.6 170 50.0
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.2e-33 147.5 217 48.8
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.5e-33 147.1 213 42.3
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 1.4e-31 140.6 214 55.1
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.8e-29 132.5 215 44.7
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 1.1e-28 131.0 210 37.1
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 3.6e-27 125.9 169 56.2
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 6.8e-26 121.7 213 49.3
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 1.5e-20 104.0 208 33.7
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.7e-19 99.0 213 37.1
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 5.2e-18 95.5 133 47.4
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 1.7e-16 90.5 76 64.5
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 1.7e-16 90.5 148 37.8
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.5e-14 82.8 156 39.1
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.3e-13 80.9 106 50.9
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 2.3e-13 80.1 202 36.1
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.2e-11 74.3 91 53.8
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 5.2e-10 68.9 65 53.8
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.9e-10 68.2 133 39.1
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 1.5e-09 67.4 76 52.6
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 4.4e-09 65.9 133 38.3
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 4.1e-07 59.3 80 51.2


User provided reference genes

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