Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 6.3e-274 946.8 477 100.0
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 3.1e-212 741.9 525 77.1
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 5.9e-211 737.6 525 76.6
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 5.9e-211 737.6 525 76.6
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.1e-209 733.4 525 76.6
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.8e-204 716.1 525 75.0
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 4.1e-204 714.9 525 75.0
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 3.7e-189 665.2 535 71.2
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 3.7e-189 665.2 524 69.7
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 1.4e-188 663.3 527 69.6
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 5.2e-183 644.8 527 67.2
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 8.8e-183 644.0 528 67.0
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 8.8e-183 644.0 521 68.1
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 4.1e-180 635.2 528 66.3
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 4.1e-180 635.2 505 68.7
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.6e-179 633.3 525 65.9
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.6e-179 633.3 527 66.4
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 2.0e-179 632.9 528 65.5
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.0e-179 632.9 511 67.3
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 7.7e-179 630.9 507 67.5
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.0e-178 630.6 525 65.7
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 1.3e-178 630.2 527 66.6
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.7e-178 629.8 507 67.5
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 3.8e-178 628.6 523 66.5
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 1.1e-177 627.1 527 66.4
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-177 627.1 507 67.1
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-177 627.1 507 67.9
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-177 627.1 507 67.9
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-177 624.8 507 66.5
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-177 624.8 507 66.5
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 9.4e-177 624.0 528 64.8
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.2e-176 623.6 527 65.8
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.6e-176 623.2 515 66.8
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 2.1e-176 622.9 526 64.3
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 2.7e-176 622.5 505 66.7
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 1.8e-175 619.8 526 65.2
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 2.3e-175 619.4 486 72.8
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 2.3e-175 619.4 528 63.6
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 3.0e-175 619.0 496 71.2
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.0e-175 619.0 525 65.1
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 5.2e-175 618.2 526 65.0
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 5.2e-175 618.2 525 64.4
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 6.8e-175 617.8 526 63.9
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 6.8e-175 617.8 528 63.8
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 6.8e-175 617.8 512 66.4
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 8.8e-175 617.5 527 65.3
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.2e-174 617.1 509 66.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-174 617.1 528 64.2
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-174 617.1 509 66.4
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.5e-174 616.7 512 65.6
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.0e-174 616.3 528 63.8
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.0e-174 616.3 526 64.6
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.4e-174 615.5 513 65.9
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 3.4e-174 615.5 513 65.9
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 5.7e-174 614.8 511 65.2
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 7.5e-174 614.4 505 66.1
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 9.8e-174 614.0 528 64.8
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.7e-173 613.2 507 66.5
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 4.8e-173 611.7 484 69.0
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 4.8e-173 611.7 528 64.2
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 6.3e-173 611.3 508 65.6
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.1e-172 610.5 529 64.3
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.1e-172 609.0 508 65.0
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.2e-171 607.1 515 65.8
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 7.7e-171 604.4 505 65.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.7e-170 603.2 528 63.4
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 3.8e-170 602.1 528 63.6
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 3.8e-170 602.1 505 65.1
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 6.5e-170 601.3 529 63.1
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 3.2e-169 599.0 500 66.4
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 9.4e-169 597.4 505 64.6
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.2e-168 597.0 528 62.3
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 1.6e-168 596.7 529 63.3
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 4.7e-168 595.1 503 65.0
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 1.0e-167 594.0 524 62.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.0e-167 594.0 565 60.4
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 2.3e-167 592.8 525 61.5
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 3.0e-167 592.4 525 63.0
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 4.0e-167 592.0 525 61.5
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 4.0e-167 592.0 539 61.6
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 4.0e-167 592.0 524 62.0
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 5.2e-167 591.7 525 61.5
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 6.8e-167 591.3 524 61.1
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 6.8e-167 591.3 524 62.0
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 8.8e-167 590.9 524 62.2
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 2.6e-166 589.3 524 62.0
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 5.7e-166 588.2 513 64.3
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 2.2e-165 586.3 500 65.4
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 2.8e-165 585.9 499 64.5
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 2.8e-165 585.9 527 60.7
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 3.1e-164 582.4 502 62.4
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 4.1e-164 582.0 502 63.9
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 9.2e-164 580.9 528 61.0
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.0e-163 579.7 525 61.1
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 4.5e-163 578.6 501 64.3
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 6.6e-162 574.7 524 60.5
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 6.6e-162 574.7 528 60.6
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 1.5e-161 573.5 525 59.8
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 2.5e-161 572.8 524 60.3
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 7.3e-161 571.2 524 60.3
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 7.3e-161 571.2 524 60.3
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 1.0e-159 567.4 516 60.3
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 1.0e-159 567.4 516 60.5
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.4e-159 567.0 516 60.3
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 2.3e-159 566.2 516 60.3
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 8.9e-159 564.3 516 59.9
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 4.4e-158 562.0 524 59.7
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.1e-156 557.4 516 59.7
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 3.3e-153 545.8 523 59.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.2e-152 543.9 514 57.4
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.2e-150 537.3 477 60.8
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 9.2e-148 527.7 478 62.1
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 1.8e-143 513.5 527 57.3
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 6.8e-143 511.5 478 60.0
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 1.7e-141 506.9 524 56.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.1e-140 504.2 471 61.1
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 8.6e-138 494.6 456 60.1
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 7.1e-132 474.9 613 48.9
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 1.6e-131 473.8 825 40.1
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 2.6e-126 456.4 531 52.7
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.3e-125 454.1 476 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 6.4e-125 451.8 505 51.1
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 8.4e-125 451.4 376 67.3
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 3.5e-123 446.0 505 51.5
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 4.6e-123 445.7 500 51.0
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 3.4e-110 402.9 268 81.0
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 8.4e-109 398.3 273 74.7
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 2.4e-108 396.7 270 74.4
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 1.5e-105 387.5 248 77.4
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 7.4e-105 385.2 260 75.0
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 9.0e-95 351.7 231 83.1
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 7.6e-94 348.6 205 82.9
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.9e-92 344.0 227 74.4
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 5.5e-92 342.4 204 88.2
CAN.G411.104 Capsicum annuum HOM05D002370 ORTHO05D003878 2.1e-83 313.9 200 83.0
CAN.G411.96 Capsicum annuum HOM05D002370 ORTHO05D003878 1.4e-82 311.2 204 81.4
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 3.1e-79 300.1 548 37.2
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 1.1e-76 291.6 289 57.8
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 6.1e-75 285.8 521 37.4
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.0e-73 280.8 204 74.0
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 1.9e-68 264.2 260 61.5
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 2.5e-68 263.8 538 36.2
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 9.4e-68 261.9 190 73.2
Haze_10320 Corylus avellana HOM05D002370 ORTHO05D003878 4.7e-67 259.6 204 67.6
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 3.0e-66 256.9 507 34.7
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 1.3e-64 251.5 205 70.7
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.6e-57 227.3 203 64.0
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 4.8e-56 223.0 121 94.2
CAN.G12816.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.6e-51 208.0 162 71.6
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 1.3e-45 188.3 471 32.1
Thecc.01G281900 Theobroma cacao HOM05D002370 ORTHO05D037785 1.5e-36 158.3 126 67.5
Thecc.06G048300 Theobroma cacao HOM05D002370 ORTHO05D037785 2.1e-35 154.5 133 63.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.7e-32 143.7 136 58.8
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.9e-23 114.8 176 41.5
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 1.6e-22 111.7 225 32.0
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 7.8e-22 109.4 59 89.8
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 5.1e-21 106.7 57 89.5
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 4.3e-20 103.6 66 80.3
Actinidia17531 Actinidia chinensis HOM05D002370 ORTHO05D003878 6.4e-16 89.7 93 57.0
PSO017G1105 Papaver somniferum HOM05D000352 ORTHO05D000260 3.0e-13 80.9 87 52.9
FAN15G0843 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.9e-12 78.2 66 59.1
TAR381G0014 Trochodendron aralioides HOM05D002370 ORTHO05D414920 7.3e-12 76.3 227 34.4
CAN.G9920.1 Capsicum annuum HOM05D002370 ORTHO05D005166 1.1e-10 72.4 81 53.1
Thecc.08G169400 Theobroma cacao HOM05D002370 ORTHO05D037785 1.4e-10 72.0 120 43.3
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 1.4e-07 62.0 37 78.4
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.4e-07 62.0 37 78.4
CAN.G1164.5 Capsicum annuum HOM05D009846 ORTHO05D002175 1.2e-06 58.9 33 87.9
CAN.G411.94 Capsicum annuum HOM05D009846 ORTHO05D000368 2.7e-06 57.8 33 84.8


User provided reference genes

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