Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 1.1e-148 531.2 603 100.0
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 8.7e-127 458.4 610 92.3
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.4e-121 441.0 611 91.3
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 2.7e-120 436.8 611 91.0
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 8.2e-85 318.9 618 79.6
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.2e-82 310.8 614 79.2
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 4.7e-80 303.1 616 78.4
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 1.1e-78 298.5 614 78.8
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 4.4e-78 296.6 620 76.5
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.8e-77 293.9 618 78.5
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.1e-76 292.0 609 79.3
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.1e-76 292.0 609 79.3
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 4.2e-73 280.0 613 79.8
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 9.4e-73 278.9 608 77.8
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 8.0e-72 275.8 567 79.9
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 3.0e-71 273.9 618 75.9
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.2e-71 273.1 609 75.9
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.5e-70 271.6 614 76.1
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.5e-70 271.6 604 76.2
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.4e-70 270.0 620 75.0
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 5.7e-70 269.6 610 75.7
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.3e-69 268.5 609 77.0
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.4e-68 265.0 566 80.7
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.4e-68 265.0 555 81.6
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.4e-68 265.0 604 75.8
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 9.1e-68 262.3 566 80.7
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.7e-67 260.8 555 81.4
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.7e-66 258.1 662 72.8
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.2e-66 257.7 611 71.7
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 2.9e-66 257.3 611 74.5
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 8.5e-66 255.8 603 76.0
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.1e-65 255.4 565 78.9
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.5e-65 255.0 609 72.7
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.5e-65 254.2 603 75.8
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 2.5e-65 254.2 563 79.0
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 4.2e-65 253.4 609 72.7
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 7.2e-65 252.7 606 75.2
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 2.3e-63 247.7 240 56.7
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 4.0e-63 246.9 620 73.5
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 5.2e-63 246.5 239 58.2
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 5.2e-63 246.5 611 75.3
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 6.8e-63 246.1 606 76.6
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 2.0e-62 244.6 612 56.7
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 3.4e-62 243.8 542 79.2
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 4.4e-62 243.4 611 75.8
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.3e-61 241.9 606 75.1
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 1.7e-61 241.5 607 76.1
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 2.8e-61 240.7 606 76.4
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 6.3e-61 239.6 549 69.6
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 8.3e-61 239.2 611 75.8
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 8.3e-61 239.2 589 76.2
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.1e-60 238.8 604 74.8
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 3.1e-60 237.3 611 75.6
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.2e-59 235.3 614 75.4
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.6e-59 235.0 573 78.2
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.6e-59 235.0 607 74.5
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 1.3e-58 231.9 571 77.8
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.9e-57 228.0 170 67.1
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.5e-57 227.6 628 71.8
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 3.2e-57 227.3 607 71.2
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 3.2e-57 227.3 601 62.6
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 3.2e-57 227.3 610 74.9
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.2e-56 225.3 231 58.9
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 2.7e-56 224.2 596 75.0
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 3.6e-56 223.8 231 58.4
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 3.6e-56 223.8 548 81.6
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 6.1e-56 223.0 608 73.4
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.4e-55 221.9 617 62.2
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.0e-55 220.7 242 54.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 5.2e-55 219.9 231 55.0
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.8e-55 219.5 253 53.0
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 2.0e-54 218.0 577 77.8
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.6e-54 217.6 611 73.6
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 4.4e-54 216.9 577 77.6
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 4.4e-54 216.9 577 77.6
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 4.4e-54 216.9 607 73.8
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 7.5e-54 216.1 578 77.9
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.7e-53 214.9 637 60.3
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.7e-53 214.9 232 56.0
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 4.9e-53 213.4 610 64.8
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 4.9e-53 213.4 604 74.0
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 1.8e-52 211.5 226 58.0
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 1.8e-52 211.5 226 58.0
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.4e-52 211.1 237 54.0
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 3.1e-52 210.7 205 61.0
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 3.1e-52 210.7 236 55.5
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 3.1e-52 210.7 607 71.5
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 7.0e-52 209.5 623 67.1
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 4.5e-51 206.8 625 70.6
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 5.9e-51 206.5 625 70.1
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 1.3e-50 205.3 471 89.0
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 2.3e-50 204.5 537 76.7
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 2.9e-50 204.1 168 64.3
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.9e-49 201.4 542 79.0
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 7.3e-49 199.5 237 53.2
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 4.7e-48 196.8 180 59.4
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 6.1e-48 196.4 213 53.5
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 2.3e-47 194.5 259 46.3
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.5e-46 191.8 569 75.6
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 7.5e-46 189.5 123 73.2
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.3e-45 188.7 489 83.6
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 1.1e-44 185.7 213 51.2
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 3.2e-44 184.1 210 50.5
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 6.6e-42 176.4 213 54.0
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 3.3e-41 174.1 552 72.3
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 6.4e-37 159.8 187 55.1
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 3.2e-36 157.5 501 77.6
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.0e-34 152.5 182 52.7
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.0e-34 152.5 182 52.7
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 8.6e-34 149.4 121 65.3
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 2.1e-32 144.8 203 43.3
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 5.4e-28 130.2 584 68.0
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.6e-22 111.3 240 85.8
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 6.4e-21 106.7 548 70.1
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 7.1e-20 103.2 202 39.1
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.5e-17 94.7 169 37.3
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 4.3e-17 94.0 63 71.4
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 7.3e-17 93.2 405 65.4
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 5.2e-15 87.0 195 34.4
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 9.9e-14 82.8 85 78.8
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 4.9e-13 80.5 153 38.6
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 1.9e-09 68.6 74 47.3
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 8.1e-08 63.2 205 33.2
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 8.1e-08 63.2 205 33.2
SGA_v2.0_scaffold68G22967 Striga asiatica HOM05D006250 ORTHO05D007107 1.2e-06 59.3 118 38.1
Cpa.g.sc367.5 Carica papaya HOM05D006250 ORTHO05D007107 1.5e-06 58.9 113 39.8


User provided reference genes

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