Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 0.0e+00 1285.8 720 100.0
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 0.0e+00 1156.0 720 90.8
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 0.0e+00 1139.8 720 90.1
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 0.0e+00 1130.2 720 88.8
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 0.0e+00 1076.6 722 79.5
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 6.4e-310 1067.0 722 78.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 7.3e-298 1026.9 723 76.9
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.7e-210 734.9 746 54.7
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.3e-209 733.8 720 55.3
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.7e-209 732.3 751 54.1
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.8e-209 731.9 751 54.1
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 9.1e-208 727.6 744 54.6
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 7.7e-207 724.5 736 55.8
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.9e-205 719.9 741 54.5
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.5e-205 719.5 719 54.5
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 6.1e-204 714.9 732 54.6
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.7e-198 696.8 744 53.1
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 8.0e-196 688.0 724 52.8
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.2e-195 685.3 722 52.2
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.2e-194 684.1 737 51.8
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 5.8e-194 681.8 743 53.3
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.8e-194 681.0 736 51.4
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.7e-193 680.2 729 52.5
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.4e-192 676.4 745 51.7
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 4.1e-192 675.6 728 52.1
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.4e-192 675.2 751 53.5
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 9.2e-192 674.5 739 53.2
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.0e-191 673.3 737 53.6
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.5e-191 672.5 742 53.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 6.0e-191 671.8 736 50.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 6.0e-191 671.8 752 51.2
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 6.0e-191 671.8 750 52.3
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.8e-191 671.4 745 50.1
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.3e-190 670.6 732 50.5
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.9e-190 669.1 734 50.7
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 6.6e-190 668.3 740 52.2
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.1e-189 667.5 735 49.1
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.2e-188 664.1 733 50.6
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.2e-188 664.1 739 51.2
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.6e-188 662.5 742 52.8
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 8.0e-188 661.4 745 50.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.8e-187 660.2 736 51.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.2e-187 658.7 744 50.9
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 6.8e-187 658.3 735 51.0
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 8.9e-187 657.9 725 52.6
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.2e-186 657.5 739 50.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.2e-186 657.5 750 49.3
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.4e-186 655.6 724 49.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 9.8e-186 654.4 729 50.3
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.7e-185 652.5 734 49.3
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.9e-185 652.1 727 49.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 6.4e-185 651.7 733 53.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 4.1e-184 649.0 714 50.8
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.1e-184 649.0 729 49.9
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.2e-183 647.5 729 49.9
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.6e-183 647.1 738 48.6
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.0e-183 646.7 726 49.4
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.7e-183 646.4 693 51.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.7e-182 643.7 755 50.7
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 3.0e-182 642.9 736 50.0
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.0e-182 642.1 740 50.1
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.9e-181 640.2 738 48.9
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-180 637.1 773 47.1
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.1e-180 636.7 691 51.5
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 4.7e-180 635.6 731 48.8
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 6.8e-179 631.7 730 48.5
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 8.9e-179 631.3 733 47.9
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.3e-177 627.5 725 48.6
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.7e-177 627.1 753 53.1
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 8.3e-177 624.8 734 49.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.2e-175 620.9 723 48.4
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.7e-175 619.8 727 48.4
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.5e-175 619.4 745 48.6
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 7.8e-175 618.2 732 48.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.5e-173 614.0 730 48.1
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 7.3e-173 611.7 692 48.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.0e-170 603.6 742 48.0
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.4e-170 602.8 733 46.5
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 5.4e-168 595.5 743 51.1
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.6e-167 594.0 750 46.1
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.1e-167 593.6 722 49.3
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.3e-166 590.9 736 49.0
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.3e-166 590.9 736 50.4
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.3e-166 590.9 737 49.8
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.3e-166 590.1 725 47.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.1e-165 587.8 741 48.7
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.5e-165 587.4 734 51.0
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.5e-165 586.6 761 45.7
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.3e-165 586.3 735 49.5
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 4.3e-165 585.9 730 50.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 5.6e-165 585.5 736 49.6
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.6e-165 585.5 731 48.6
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.4e-163 580.1 743 47.6
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 6.9e-163 578.6 731 49.2
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.3e-161 574.3 555 56.8
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.8e-161 572.8 644 49.5
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.2e-160 569.7 732 50.5
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 4.2e-160 569.3 730 50.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.0e-158 563.1 732 46.0
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.5e-157 560.8 653 50.7
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.6e-156 557.4 735 46.0
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 6.2e-156 555.4 788 43.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 3.1e-155 553.1 735 46.0
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.9e-153 545.8 635 49.1
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.1e-152 544.7 721 43.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 6.7e-150 535.4 652 48.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 6.7e-150 535.4 821 42.5
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 5.3e-147 525.8 642 46.6
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.5e-146 524.2 648 48.0
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 7.9e-143 511.9 651 45.6
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-128 464.5 692 41.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.4e-128 464.5 483 53.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.9e-128 464.2 672 41.5
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 5.5e-128 462.6 770 42.7
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.3e-126 457.2 559 47.4
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.1e-115 418.7 754 42.8
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.0e-113 415.2 816 36.8
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.8e-110 404.4 766 40.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.3e-110 404.1 744 36.8
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.2e-106 391.7 757 37.6
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.3e-84 318.5 498 39.2
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.6e-79 301.6 510 38.4
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-76 292.0 684 31.7
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-74 285.4 468 38.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.3e-57 228.8 454 34.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.2e-55 222.2 691 27.9
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.3e-44 185.7 224 46.9
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.1e-43 179.9 133 66.9
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 5.1e-41 173.7 202 45.5
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.1e-39 168.3 128 66.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.2e-34 152.5 335 31.6
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 2.7e-34 151.4 98 75.5
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.5e-34 151.0 199 43.7
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.6e-32 143.7 132 58.3
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.8e-31 141.4 112 63.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.8e-30 138.7 95 68.4
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 4.5e-29 134.0 97 60.8
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 4.5e-21 107.5 116 45.7
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 3.7e-15 87.8 49 75.5
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 6.9e-14 83.6 73 54.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.1e-11 76.3 189 37.0
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 3.2e-11 74.7 111 41.4
Sopen05g027540 Solanum pennellii HOM05D005219 ORTHO05D394344 3.2e-11 74.7 81 58.0
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.1e-10 72.0 494 30.2
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 2.7e-10 71.6 44 90.9
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 4.8e-07 60.8 169 28.4
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 6.3e-07 60.5 182 27.5
ATR0820G030 Amborella trichopoda HOM05D001312 ORTHO05D001832 1.1e-06 59.7 174 32.2
CDE02G1918 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 1.1e-06 59.7 167 31.7
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 1.1e-06 59.7 150 32.0
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 1.4e-06 59.3 184 28.8
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 1.8e-06 58.9 171 27.5
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 1.8e-06 58.9 96 38.5
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 2.4e-06 58.5 124 38.7
Peaxi162Scf00157g00417 Petunia axillaris HOM05D001312 ORTHO05D001832 2.4e-06 58.5 224 28.1
Sabra04G0030600 Salix brachista HOM05D001439 ORTHO05D002726 2.4e-06 58.5 123 35.8
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 3.1e-06 58.2 92 38.0
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 4.1e-06 57.8 98 40.8
Dinv12534 Davidia involucrata HOM05D001312 ORTHO05D001832 4.1e-06 57.8 184 27.7
FAN09G0796 Fragaria x ananassa HOM05D001439 ORTHO05D002726 4.1e-06 57.8 77 48.1
Glyma.13G320100 Glycine max HOM05D001312 ORTHO05D001832 4.1e-06 57.8 186 29.0
Peaxi162Scf00789g00216 Petunia axillaris HOM05D001312 ORTHO05D001832 4.1e-06 57.8 220 25.5
Glyma.12G180700 Glycine max HOM05D001312 ORTHO05D001832 5.3e-06 57.4 186 28.5
Lj1C693T4 Lonicera japonica HOM05D001439 ORTHO05D002726 5.3e-06 57.4 123 36.6
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 6.9e-06 57.0 170 28.8
CDE10G0226 Ceratophyllum demersum HOM05D001439 ORTHO05D002726 6.9e-06 57.0 89 40.4
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 6.9e-06 57.0 163 30.7
RcHm_v2.0_Chr2g0127091 Rosa chinensis HOM05D001439 ORTHO05D002726 6.9e-06 57.0 77 46.8
SEGI_30380 Sequoiadendron giganteum HOM05D001439 ORTHO05D002726 6.9e-06 57.0 94 40.4
Dinv29934 Davidia involucrata HOM05D001439 ORTHO05D002726 9.1e-06 56.6 79 45.6


User provided reference genes

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