Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 4.8e-299 1030.4 524 100.0
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 3.7e-275 951.0 524 92.7
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.0e-272 943.0 524 91.8
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 4.7e-254 880.9 524 86.3
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 1.0e-245 853.2 522 83.7
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.7e-203 713.0 527 68.1
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 1.3e-192 676.8 527 65.1
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.1e-189 667.2 527 65.5
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.7e-187 659.8 527 63.8
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.1e-186 657.1 527 63.6
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 2.5e-186 656.0 528 63.1
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 3.6e-185 652.1 527 62.6
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 3.9e-184 648.7 527 62.6
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.8e-181 639.8 527 63.0
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 2.6e-180 636.0 527 62.4
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 2.6e-180 636.0 532 62.6
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 7.9e-177 624.4 526 61.0
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.7e-174 616.7 527 61.9
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 3.1e-173 612.5 526 58.4
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 5.3e-173 611.7 528 60.0
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.3e-171 607.1 529 59.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 2.2e-171 606.3 526 58.2
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.4e-170 603.6 529 59.2
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.5e-170 602.8 529 59.0
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 4.2e-170 602.1 529 59.0
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 4.2e-170 602.1 529 58.8
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 3.6e-169 599.0 547 57.0
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 4.7e-169 598.6 502 61.4
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 1.0e-168 597.4 528 58.3
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 1.4e-168 597.0 524 58.2
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 3.0e-168 595.9 543 57.3
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 5.2e-168 595.1 522 57.5
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.6e-167 592.8 547 55.9
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 9.7e-167 590.9 547 55.8
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.7e-166 590.1 547 55.8
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.2e-166 589.7 547 55.9
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 1.1e-165 587.4 504 60.1
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 1.4e-165 587.0 528 56.6
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 3.1e-165 585.9 529 58.4
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 4.1e-165 585.5 529 56.9
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 5.3e-165 585.1 552 56.3
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.7e-163 580.1 502 60.6
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 5.0e-163 578.6 531 56.3
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 5.0e-163 578.6 529 56.7
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 1.9e-162 576.6 526 56.3
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 2.7e-161 572.8 527 55.2
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.0e-160 569.3 531 55.7
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 5.2e-160 568.5 525 57.7
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.7e-158 563.5 529 56.5
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 1.2e-156 557.4 544 56.1
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.6e-156 557.0 529 57.8
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 2.0e-156 556.6 529 56.0
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.9e-155 552.7 548 54.6
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 3.8e-155 552.4 571 52.4
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 2.1e-153 546.6 547 53.9
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.1e-153 546.6 535 55.3
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 6.1e-153 545.0 529 54.1
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 2.6e-151 539.7 528 55.1
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 3.7e-150 535.8 523 53.9
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 5.9e-148 528.5 507 53.1
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.0e-147 527.7 606 49.3
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 4.2e-146 522.3 526 54.0
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 1.0e-144 517.7 574 49.8
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 1.8e-144 516.9 527 52.0
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 1.5e-143 513.8 552 50.5
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 7.5e-143 511.5 459 58.2
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 9.8e-143 511.1 555 49.5
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 9.2e-141 504.6 524 50.8
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.6e-140 503.8 527 50.5
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 4.5e-140 502.3 451 57.0
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 8.6e-139 498.0 526 52.1
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.2e-137 494.2 527 50.1
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.8e-136 490.3 527 49.5
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 6.8e-136 488.4 651 44.1
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 3.7e-134 482.6 534 47.8
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 6.4e-134 481.9 526 48.9
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 6.4e-134 481.9 526 48.9
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 1.1e-133 481.1 535 48.8
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 7.0e-133 478.4 442 58.4
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 3.0e-131 473.0 653 43.5
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 1.9e-130 470.3 442 55.0
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.5e-130 469.9 534 49.3
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 9.5e-130 468.0 531 46.7
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 1.5e-127 460.7 536 46.5
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 1.5e-127 460.7 529 46.1
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 3.7e-126 456.1 540 46.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 1.9e-125 453.8 529 47.3
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 7.8e-124 448.4 534 46.3
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 1.9e-122 443.7 526 46.4
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 1.5e-119 434.1 250 90.0
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 1.7e-118 430.6 536 44.8
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.1e-116 423.7 546 43.8
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 4.6e-116 422.5 531 42.6
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 7.3e-114 415.2 534 43.3
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.1e-112 411.4 534 43.1
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.8e-112 410.6 465 47.1
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 5.2e-112 409.1 533 43.3
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.1e-109 399.4 541 43.3
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 9.2e-109 398.3 558 41.2
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 1.9e-106 390.6 541 41.4
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.2e-105 387.9 543 42.4
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 1.1e-104 384.8 546 40.5
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 3.1e-104 383.3 537 41.0
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 9.9e-103 378.3 546 40.1
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.1e-101 374.8 532 42.1
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.0e-100 369.0 529 42.2
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.8e-96 357.5 541 38.3
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.9e-94 349.4 495 42.0
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 4.6e-92 342.8 281 60.1
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 3.3e-90 336.7 544 36.4
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.2e-85 319.7 176 90.9
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 2.5e-82 310.5 329 52.0
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.0e-80 303.1 251 59.4
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 2.9e-78 297.0 345 48.1
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 7.1e-77 292.4 482 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 6.3e-73 279.3 530 33.2
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.5e-71 274.6 263 55.1
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 6.1e-68 262.7 405 35.6
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 6.7e-67 259.2 391 40.9
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 8.8e-67 258.8 313 44.4
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.9e-61 241.1 313 44.7
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 2.8e-57 227.3 517 30.4
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 5.3e-56 223.0 219 53.9
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 1.6e-52 211.5 224 52.7
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 8.8e-51 205.7 250 44.0
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.0e-50 204.5 330 40.3
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.0e-46 192.2 146 67.1
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 4.1e-40 170.2 138 60.9
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 1.2e-39 168.7 327 32.1
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 2.7e-39 167.5 138 60.1
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 8.8e-35 152.5 503 27.2
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 3.4e-34 150.6 237 38.4
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.8e-33 146.7 113 61.9
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 1.3e-30 138.7 271 31.7
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 4.2e-29 133.7 82 87.8
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 8.0e-28 129.4 563 23.1
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 8.0e-28 129.4 567 24.0
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 2.0e-26 124.8 238 35.3
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 4.9e-25 120.2 138 47.1
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.3e-21 107.1 212 33.5
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 6.8e-19 99.8 156 39.1
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 1.7e-17 95.1 86 58.1
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 2.2e-17 94.7 83 60.2
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.9e-17 94.4 136 41.2
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 3.7e-17 94.0 94 55.3
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 1.0e-14 85.9 94 52.1
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 3.0e-14 84.3 352 25.9
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 3.9e-14 84.0 141 39.0
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 5.0e-14 83.6 46 95.7
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 2.1e-12 78.2 92 48.9
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 1.2e-10 72.4 59 57.6
BcaC05g26356 Brassica carinata HOM05D003115 ORTHO05D003595 6.4e-09 66.6 95 36.8
Os01g0584800 Oryza sativa ssp. japonica HOM05D003115 ORTHO05D003595 1.9e-08 65.1 46 69.6
RcHm_v2.0_Chr2g0155431 Rosa chinensis HOM05D003115 ORTHO05D003595 1.2e-07 62.4 78 43.6
CBR_g75372 Chara braunii HOM05D003115 ORTHO05D003595 2.1e-07 61.6 74 43.2
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 2.7e-07 61.2 116 34.5
Cc00_g09600 Coffea canephora HOM05D003115 ORTHO05D003595 3.5e-07 60.8 34 70.6
Haze_25244 Corylus avellana HOM05D003115 ORTHO05D003595 3.5e-07 60.8 52 50.0


User provided reference genes

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