Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1153.3 Capsicum annuum HOM05D003741 ORTHO05D004247 9.5e-56 219.9 111 100.0
CAN.G1222.9 Capsicum annuum HOM05D003741 ORTHO05D004247 5.8e-37 157.5 87 89.7
Nitab4.5_0002463g0040 Nicotiana tabacum HOM05D003741 ORTHO05D004247 1.3e-33 146.4 87 85.1
Nitab4.5_0003773g0090 Nicotiana tabacum HOM05D001270 ORTHO05D001099 3.9e-33 144.8 87 83.9
Solyc02g069110.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 6.7e-33 144.1 87 81.6
Nitab4.5_0002056g0060 Nicotiana tabacum HOM05D003741 ORTHO05D004247 1.1e-32 143.3 87 82.8
Solyc02g069100.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 1.3e-31 139.8 89 77.5
Sopen02g018230 Solanum pennellii HOM05D003741 ORTHO05D004247 2.8e-31 138.7 87 79.3
CAN.G1222.10 Capsicum annuum HOM05D003741 ORTHO05D004247 1.1e-30 136.7 87 78.2
Solyc02g069090.3 Solanum lycopersicum HOM05D003741 ORTHO05D004247 2.2e-28 129.0 87 71.3
Peaxi162Scf00149g00919 Petunia axillaris HOM05D003741 ORTHO05D004247 1.1e-27 126.7 87 71.3
Peaxi162Scf00149g01016 Petunia axillaris HOM05D003741 ORTHO05D004247 5.6e-24 114.4 107 61.7
MD17G1285700 Malus domestica HOM05D003741 ORTHO05D004247 4.8e-23 111.3 87 60.9
CAN.G1222.12 Capsicum annuum HOM05D003741 ORTHO05D004247 1.4e-22 109.8 86 66.3
Potri.002G184300 Populus trichocarpa HOM05D003741 ORTHO05D004247 2.4e-22 109.0 102 54.9
CAN.G1222.7 Capsicum annuum HOM05D003741 ORTHO05D004247 6.9e-22 107.5 81 71.6
Sabra02G0131500 Salix brachista HOM05D003741 ORTHO05D004247 6.9e-22 107.5 87 59.8
TWI23G0544 Tripterygium wilfordii HOM05D003741 ORTHO05D004247 6.9e-22 107.5 102 52.0
Atru.chr5.821 Acer truncatum HOM05D003741 ORTHO05D004247 9.0e-22 107.1 87 60.9
Atru.chr5.823 Acer truncatum HOM05D003741 ORTHO05D004247 9.0e-22 107.1 110 51.8
Nn4g25264 Nelumbo nucifera HOM05D003741 ORTHO05D004247 9.0e-22 107.1 103 54.4
Eucgr.A00982 Eucalyptus grandis HOM05D003741 ORTHO05D004247 1.5e-21 106.3 89 59.6
Manes.01G236900 Manihot esculenta HOM05D003741 ORTHO05D004247 2.0e-21 105.9 99 58.6
Ciclev10020859m.g Citrus clementina HOM05D003741 ORTHO05D004247 2.6e-21 105.5 104 55.8
TAR636G2991 Trochodendron aralioides HOM05D003741 ORTHO05D004247 2.6e-21 105.5 110 51.8
Lju2566A1T38 Lonicera japonica HOM05D003741 ORTHO05D004247 3.4e-21 105.1 89 60.7
RcHm_v2.0_Chr3g0485051 Rosa chinensis HOM05D003741 ORTHO05D004247 4.5e-21 104.8 89 55.1
FAN19G1627 Fragaria x ananassa HOM05D003741 ORTHO05D004247 5.8e-21 104.4 89 56.2
GSVIVG01028272001 Vitis vinifera HOM05D003741 ORTHO05D004247 5.8e-21 104.4 103 53.4
CsaV3_3G043370 Cucumis sativus L. HOM05D003741 ORTHO05D004247 7.6e-21 104.0 91 56.0
Dinv03516 Davidia involucrata HOM05D003741 ORTHO05D004247 7.6e-21 104.0 87 60.9
Manes.05G006300 Manihot esculenta HOM05D003741 ORTHO05D004247 7.6e-21 104.0 103 50.5
Prupe.3G000200 Prunus persica HOM05D003741 ORTHO05D004247 7.6e-21 104.0 103 51.5
Potri.002G184201 Populus trichocarpa HOM05D003741 ORTHO05D004247 1.3e-20 103.2 88 54.5
QL01p026787 Quercus lobata HOM05D003741 ORTHO05D004247 1.3e-20 103.2 91 56.0
FvH4_1g25910 Fragaria vesca HOM05D003741 ORTHO05D004247 2.2e-20 102.4 89 55.1
Oeu060889.1 Olea europaea HOM05D003741 ORTHO05D004247 2.9e-20 102.1 87 57.5
Migut.D00004 Erythranthe guttata HOM05D003741 ORTHO05D004247 3.8e-20 101.7 101 51.5
FAN28G0860 Fragaria x ananassa HOM05D003741 ORTHO05D004247 3.8e-20 101.7 89 55.1
Oeu060888.1 Olea europaea HOM05D003741 ORTHO05D004247 4.9e-20 101.3 88 56.8
Duzib133G0965 Durio zibethinus HOM05D003741 ORTHO05D004247 8.4e-20 100.5 96 54.2
Potri.014G109801 Populus trichocarpa HOM05D003741 ORTHO05D004247 8.4e-20 100.5 96 51.0
ClCG10G013270 Citrullus lanatus HOM05D003741 ORTHO05D004247 1.1e-19 100.1 91 56.0
Gorai.007G055400 Gossypium raimondii HOM05D003741 ORTHO05D004247 1.1e-19 100.1 105 47.6
Hma1.2p1_0098F.1_g048300 Hydrangea macrophylla HOM05D003741 ORTHO05D004247 1.4e-19 99.8 92 56.5
Thhalv10008009m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 1.9e-19 99.4 100 51.0
Sabra02G0131600 Salix brachista HOM05D003741 ORTHO05D004247 1.9e-19 99.4 89 53.9
CSS0030537 Camellia sinensis var. sinensis HOM05D003741 ORTHO05D004247 2.5e-19 99.0 87 58.6
DCAR_030726 Daucus carota HOM05D003741 ORTHO05D004247 2.5e-19 99.0 87 59.8
PGR042G0131 Punica granatum HOM05D003741 ORTHO05D004247 2.5e-19 99.0 103 49.5
CARHR001840 Cardamine hirsuta HOM05D003741 ORTHO05D004247 3.2e-19 98.6 100 52.0
CANSAT11G2508 Cannabis sativa HOM05D003741 ORTHO05D004247 4.2e-19 98.2 87 54.0
Duzib138G0796 Durio zibethinus HOM05D003741 ORTHO05D004247 5.5e-19 97.8 87 54.0
Thecc.01G328700 Theobroma cacao HOM05D003741 ORTHO05D004247 5.5e-19 97.8 87 55.2
Aa31LG5G1330 Aethionema arabicum HOM05D003741 ORTHO05D004247 7.1e-19 97.4 87 55.2
Cpa.g.sc57.55 Carica papaya HOM05D003741 ORTHO05D004247 7.1e-19 97.4 87 57.5
Haze_05173 Corylus avellana HOM05D003741 ORTHO05D004247 7.1e-19 97.4 86 54.7
Haze_05174 Corylus avellana HOM05D003741 ORTHO05D004247 7.1e-19 97.4 86 54.7
AT1G02305 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 9.3e-19 97.1 98 51.0
arahy.Tifrunner.gnm1.ann1.8L6AK6 Arachis hypogaea HOM05D003741 ORTHO05D004247 9.3e-19 97.1 87 55.2
Gohir.D11G050925 Gossypium hirsutum HOM05D003741 ORTHO05D004247 9.3e-19 97.1 87 52.9
Gohir.D11G051000 Gossypium hirsutum HOM05D003741 ORTHO05D004247 9.3e-19 97.1 87 52.9
Actinidia06418 Actinidia chinensis HOM05D003741 ORTHO05D004247 1.2e-18 96.7 87 56.3
Sp1g01380 Schrenkiella parvula HOM05D003741 ORTHO05D004247 1.2e-18 96.7 103 50.5
Sed0014336 Sechium edule HOM05D003741 ORTHO05D004247 1.2e-18 96.7 100 49.0
arahy.Tifrunner.gnm1.ann1.00ZDTM Arachis hypogaea HOM05D003741 ORTHO05D004247 1.6e-18 96.3 78 59.0
MSTRG.21732 Avicennia marina HOM05D003741 ORTHO05D004247 1.6e-18 96.3 103 49.5
COL.COLO4_23087 Corchorus olitorius HOM05D003741 ORTHO05D004247 1.6e-18 96.3 105 47.6
Rhsim01G0001600 Rhododendron simsii HOM05D003741 ORTHO05D004247 2.7e-18 95.5 87 55.2
Glyma.19G223300 Glycine max HOM05D003741 ORTHO05D004247 3.5e-18 95.1 82 54.9
THA.LOC104825920 Tarenaya hassleriana HOM05D003741 ORTHO05D004247 3.5e-18 95.1 87 52.9
HPP92_017316 Vanilla planifolia HOM05D003741 ORTHO05D004247 3.5e-18 95.1 99 48.5
CARHR001600 Cardamine hirsuta HOM05D003741 ORTHO05D004247 4.6e-18 94.7 103 48.5
Thhalv10028753m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 4.6e-18 94.7 100 50.0
THA.LOC104815908 Tarenaya hassleriana HOM05D003741 ORTHO05D004247 4.6e-18 94.7 85 54.1
AL1G11640 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 6.0e-18 94.4 98 52.0
Glyma.03G226300 Glycine max HOM05D003741 ORTHO05D004247 6.0e-18 94.4 82 54.9
BcaB03g13517 Brassica carinata HOM05D003741 ORTHO05D004247 7.9e-18 94.0 100 48.0
Lj1g0024084 Lotus japonicus HOM05D003741 ORTHO05D004247 7.9e-18 94.0 110 49.1
Psat3g015680 Pisum sativum HOM05D003741 ORTHO05D004247 7.9e-18 94.0 101 52.5
vmacro02353 Vaccinium macrocarpon HOM05D003741 ORTHO05D004247 7.9e-18 94.0 85 55.3
CAN.G758.10 Capsicum annuum HOM05D003741 ORTHO05D004247 1.0e-17 93.6 87 62.1
Medtr7g111050 Medicago truncatula HOM05D003741 ORTHO05D004247 1.0e-17 93.6 80 56.2
Sed0003001 Sechium edule HOM05D003741 ORTHO05D004247 1.3e-17 93.2 87 54.0
ATR0796G236 Amborella trichopoda HOM05D003741 ORTHO05D004247 1.8e-17 92.8 96 46.9
Gohir.D11G107766 Gossypium hirsutum HOM05D003741 ORTHO05D004247 1.8e-17 92.8 87 52.9
CiPaw.07G128200 Carya illinoinensis HOM05D003741 ORTHO05D004247 2.3e-17 92.4 89 49.4
Medtr7g111060 Medicago truncatula HOM05D003741 ORTHO05D004247 2.3e-17 92.4 111 46.8
C09p01250 Brassica napus HOM05D003741 ORTHO05D004247 3.9e-17 91.7 107 49.5
BolC9t53059H Brassica oleracea HOM05D003741 ORTHO05D004247 3.9e-17 91.7 107 49.5
Lalb_Chr04g0260241 Lupinus albus HOM05D003741 ORTHO05D004247 3.9e-17 91.7 73 60.3
BcaC06g35601 Brassica carinata HOM05D003741 ORTHO05D004247 5.1e-17 91.3 85 52.9
C07p13080 Brassica napus HOM05D003741 ORTHO05D004247 5.1e-17 91.3 85 52.9
Gorai.007G115600 Gossypium raimondii HOM05D003741 ORTHO05D004247 5.1e-17 91.3 109 46.8
Lalb_Chr18g0046281 Lupinus albus HOM05D003741 ORTHO05D004247 5.1e-17 91.3 110 47.3
Carub.0001s0134 Capsella rubella HOM05D003741 ORTHO05D004247 6.7e-17 90.9 100 49.0
A08p37710 Brassica napus HOM05D003741 ORTHO05D004247 8.7e-17 90.5 85 52.9
BraA08t35667Z Brassica rapa HOM05D003741 ORTHO05D004247 8.7e-17 90.5 85 52.9
Gohir.A11G103300 Gossypium hirsutum HOM05D003741 ORTHO05D004247 8.7e-17 90.5 109 46.8
Hund18513 Selenicereus undatus HOM05D003741 ORTHO05D004247 8.7e-17 90.5 100 44.0
TPR.G8367 Trifolium pratense HOM05D003741 ORTHO05D004247 8.7e-17 90.5 73 61.6
A09p01170 Brassica napus HOM05D003741 ORTHO05D004247 1.1e-16 90.1 107 48.6
BcaB01g02127 Brassica carinata HOM05D003741 ORTHO05D004247 1.5e-16 89.7 103 48.5
BcaC04g24082 Brassica carinata HOM05D003741 ORTHO05D004247 1.9e-16 89.4 107 47.7
Aqoxy2G02613 Aquilegia oxysepala HOM05D003741 ORTHO05D004247 3.3e-16 88.6 73 54.8
BraA09t35787Z Brassica rapa HOM05D003741 ORTHO05D004247 3.3e-16 88.6 103 47.6
Sp6g01520 Schrenkiella parvula HOM05D003741 ORTHO05D004247 3.3e-16 88.6 103 46.6
BcaB01g06137 Brassica carinata HOM05D003741 ORTHO05D004247 4.3e-16 88.2 85 51.8
BolC3t12578H Brassica oleracea HOM05D003741 ORTHO05D004247 4.3e-16 88.2 85 51.8
AT4G01610 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 5.7e-16 87.8 91 49.5
Carub.0006s3558 Capsella rubella HOM05D003741 ORTHO05D004247 5.7e-16 87.8 85 49.4
CARHR250060 Cardamine hirsuta HOM05D003741 ORTHO05D004247 7.4e-16 87.4 91 50.5
PSO210G2167 Papaver somniferum HOM05D003741 ORTHO05D004247 7.4e-16 87.4 79 53.2
PSO761G0307 Papaver somniferum HOM05D003741 ORTHO05D004247 7.4e-16 87.4 79 53.2
Phvul.001G220100 Phaseolus vulgaris HOM05D003741 ORTHO05D004247 7.4e-16 87.4 107 44.9
AL6G51730 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 1.3e-15 86.7 85 49.4
AUR62001249 Chenopodium quinoa HOM05D003741 ORTHO05D004247 1.3e-15 86.7 85 47.1
Psat3g015720 Pisum sativum HOM05D003741 ORTHO05D004247 1.3e-15 86.7 73 57.5
AL1G11630 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 1.6e-15 86.3 87 51.7
SGA_v2.0_scaffold80G25671 Striga asiatica HOM05D003741 ORTHO05D004247 1.6e-15 86.3 86 53.5
AT1G02300 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 2.2e-15 85.9 87 51.7
CDE05G0438 Ceratophyllum demersum HOM05D003741 ORTHO05D004247 2.2e-15 85.9 87 48.3
AUR62022081 Chenopodium quinoa HOM05D003741 ORTHO05D004247 2.2e-15 85.9 85 45.9
Cc02_g27660 Coffea canephora HOM05D003741 ORTHO05D004247 2.2e-15 85.9 87 49.4
PSO210G0649 Papaver somniferum HOM05D003741 ORTHO05D004247 2.8e-15 85.5 83 49.4
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.7e-15 85.1 73 57.5
Hund05614 Selenicereus undatus HOM05D003741 ORTHO05D004247 1.4e-14 83.2 87 46.0
Zm00001eb322580 Zea mays HOM05D003741 ORTHO05D004247 1.8e-14 82.8 99 43.4
Ah.15g095460 Amaranthus hybridus HOM05D003741 ORTHO05D004247 3.1e-14 82.0 80 48.8
C04p03330 Brassica napus HOM05D003741 ORTHO05D004247 4.1e-14 81.6 71 53.5
VMungo1383G0455 Vigna mungo HOM05D003741 ORTHO05D004247 5.3e-14 81.3 73 53.4
DCAR_002344 Daucus carota HOM05D003741 ORTHO05D004247 6.9e-14 80.9 69 56.5
BcaC02g12465 Brassica carinata HOM05D003741 ORTHO05D004247 9.0e-14 80.5 104 44.2
FAN26G2502 Fragaria x ananassa HOM05D002459 ORTHO05D003006 2.6e-13 79.0 67 56.7
BraA07t28072Z Brassica rapa HOM05D003741 ORTHO05D004247 3.4e-13 78.6 73 52.1
A07p02730 Brassica napus HOM05D003741 ORTHO05D004247 7.6e-13 77.4 73 52.1
Ah.08g218400 Amaranthus hybridus HOM05D003741 ORTHO05D004247 8.5e-12 73.9 100 38.0
BolC7t41802H Brassica oleracea HOM05D003741 ORTHO05D004247 8.5e-12 73.9 67 53.7
Aa31LG1G10210 Aethionema arabicum HOM05D003741 ORTHO05D004247 1.9e-11 72.8 58 63.8
Ca_09258_v3 Cicer arietinum L. HOM05D003741 ORTHO05D004247 9.4e-11 70.5 57 61.4
SMO351G0395 Selaginella moellendorffii HOM05D003741 ORTHO05D004247 1.6e-10 69.7 72 47.2
CAN.G1222.15 Capsicum annuum HOM05D003741 ORTHO05D004247 1.0e-09 67.0 88 50.0
BolC8t46806H Brassica oleracea HOM05D003741 ORTHO05D004247 1.8e-09 66.2 83 43.4
Os05g0310500 Oryza sativa ssp. japonica HOM05D003741 ORTHO05D004247 6.7e-09 64.3 135 33.3
AagrBONN_evm.TU.Sc2ySwM_117.76 Anthoceros agrestis HOM05D003741 ORTHO05D004247 8.8e-09 63.9 75 46.7
Ca_09259_v3 Cicer arietinum L. HOM05D003741 ORTHO05D004247 1.9e-08 62.8 50 62.0
Cc02_g27680 Coffea canephora HOM05D003741 ORTHO05D004247 3.3e-08 62.0 77 45.5
CAN.G1222.11 Capsicum annuum HOM05D003741 ORTHO05D004247 3.7e-07 58.5 47 59.6
EL10Ac7g18033 Beta vulgaris HOM05D003741 ORTHO05D004247 4.8e-07 58.2 81 35.8
C08p00070 Brassica napus HOM05D003741 ORTHO05D004247 4.8e-07 58.2 69 43.5
CAN.G1629.1 Capsicum annuum HOM05D003741 ORTHO05D004247 8.2e-07 57.4 41 63.4
Pp3c14_8830 Physcomitrium patens HOM05D003741 ORTHO05D004247 9.1e-06 53.9 72 41.7


User provided reference genes

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