Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 4.9e-117 424.5 214 100.0
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 7.6e-110 400.6 214 90.7
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 6.9e-103 377.5 214 85.5
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 6.9e-103 377.5 214 85.5
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 1.5e-102 376.3 215 85.6
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 1.4e-95 353.2 190 89.5
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 2.2e-93 345.9 214 75.7
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.9e-92 342.8 214 75.2
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 3.5e-91 338.6 214 74.3
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 6.1e-91 337.8 214 75.2
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 6.1e-91 337.8 214 75.2
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 2.3e-90 335.9 214 76.2
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 2.3e-90 335.9 214 74.3
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 3.9e-90 335.1 214 73.8
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 3.9e-90 335.1 214 73.8
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 6.7e-90 334.3 214 74.3
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 1.1e-89 333.6 214 72.9
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 1.9e-89 332.8 219 73.5
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.9e-89 332.8 214 72.9
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 7.4e-89 330.9 220 74.1
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 1.3e-88 330.1 214 72.9
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 1.6e-88 329.7 214 72.4
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 2.2e-88 329.3 214 74.3
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.8e-88 328.9 220 72.3
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 3.7e-88 328.6 214 72.0
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 6.3e-88 327.8 220 71.8
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 1.8e-87 326.2 214 71.5
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.4e-87 325.9 220 71.8
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 3.1e-87 325.5 214 73.4
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 4.1e-87 325.1 214 72.0
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 6.9e-87 324.3 214 72.0
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 6.9e-87 324.3 214 70.1
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.5e-86 323.2 225 70.7
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 2.0e-86 322.8 239 66.1
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 2.0e-86 322.8 214 71.0
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.6e-86 322.4 214 71.0
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 3.4e-86 322.0 214 71.5
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 3.4e-86 322.0 214 70.6
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 1.0e-85 320.5 214 70.1
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.0e-85 320.5 213 71.4
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 1.7e-85 319.7 214 68.7
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 3.8e-85 318.5 215 71.6
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 5.0e-85 318.2 214 72.0
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 8.5e-85 317.4 214 68.2
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 8.5e-85 317.4 214 69.6
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 1.1e-84 317.0 214 71.5
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 1.4e-84 316.6 214 71.5
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 1.4e-84 316.6 212 72.6
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 1.9e-84 316.2 229 65.9
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 2.5e-84 315.8 215 71.6
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.5e-84 315.8 217 70.0
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.2e-84 315.5 217 69.6
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 5.5e-84 314.7 215 71.2
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 1.6e-83 313.2 212 72.2
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 2.1e-83 312.8 215 71.6
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 2.7e-83 312.4 214 70.1
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.6e-83 312.0 213 70.0
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 3.6e-83 312.0 214 68.2
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 4.6e-83 311.6 304 53.3
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 6.1e-83 311.2 214 69.2
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 7.9e-83 310.8 214 69.2
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 7.9e-83 310.8 214 69.2
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 1.4e-82 310.1 214 69.6
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 1.4e-82 310.1 214 69.6
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.8e-82 309.7 214 70.6
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 6.7e-82 307.8 253 60.9
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 2.5e-81 305.8 214 67.8
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 4.3e-81 305.1 214 67.8
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 5.7e-81 304.7 215 72.1
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 9.7e-81 303.9 214 70.1
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 2.2e-80 302.8 214 65.4
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 3.7e-80 302.0 212 67.0
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 1.2e-78 297.0 214 65.9
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.2e-78 297.0 191 74.3
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 1.5e-78 296.6 214 65.9
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 2.6e-78 295.8 255 58.8
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 2.6e-78 295.8 212 67.5
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 4.5e-78 295.0 191 73.8
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 7.7e-78 294.3 216 67.1
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 1.3e-77 293.5 215 67.0
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.2e-77 292.7 191 71.2
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.9e-76 289.7 191 74.3
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 3.2e-76 288.9 214 64.0
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 4.2e-76 288.5 214 65.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 9.4e-76 287.3 212 65.1
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 2.7e-75 285.8 213 62.9
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 4.7e-75 285.0 214 65.9
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 7.9e-75 284.3 214 64.0
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 1.0e-74 283.9 214 65.0
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 6.7e-74 281.2 186 71.0
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 6.7e-74 281.2 214 64.0
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 4.4e-73 278.5 189 70.9
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 9.7e-73 277.3 215 63.3
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 9.7e-73 277.3 193 67.4
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 3.7e-72 275.4 212 64.2
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 1.1e-71 273.9 214 61.7
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 1.8e-71 273.1 219 60.3
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 4.1e-71 271.9 214 60.7
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 4.1e-71 271.9 214 60.3
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 5.3e-71 271.6 145 89.0
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 7.0e-71 271.2 214 62.6
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 9.1e-71 270.8 214 61.2
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.6e-70 269.2 214 62.6
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 3.5e-70 268.9 213 62.0
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 3.5e-70 268.9 213 62.0
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 3.5e-70 268.9 213 62.0
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 4.5e-70 268.5 214 62.1
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 5.9e-70 268.1 213 62.0
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 5.9e-70 268.1 213 61.0
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 5.9e-70 268.1 214 61.7
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 7.7e-70 267.7 214 62.1
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.0e-69 267.3 213 59.2
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 1.0e-69 267.3 214 60.7
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.0e-69 267.3 213 61.0
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 1.3e-69 266.9 212 63.2
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.7e-69 266.5 214 61.7
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 1.7e-69 266.5 214 59.8
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 2.9e-69 265.8 214 61.7
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 2.9e-69 265.8 214 58.9
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 3.8e-69 265.4 214 59.3
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 8.5e-69 264.2 213 60.6
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 1.1e-68 263.8 214 59.3
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 1.9e-68 263.1 215 59.1
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 2.5e-68 262.7 214 59.8
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 7.2e-68 261.2 214 59.8
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 2.1e-67 259.6 214 59.8
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 3.6e-67 258.8 214 61.2
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 3.6e-67 258.8 215 60.5
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 1.0e-66 257.3 214 59.3
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 1.8e-66 256.5 211 59.7
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 3.0e-66 255.8 215 60.9
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 5.7e-65 251.5 214 57.9
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 7.5e-65 251.1 205 60.0
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 9.7e-65 250.8 189 66.1
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 1.7e-64 250.0 186 65.1
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 6.3e-64 248.1 192 63.5
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 5.3e-63 245.0 155 76.8
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 4.5e-62 241.9 210 57.6
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 1.5e-60 236.9 240 54.6
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 1.6e-59 233.4 203 56.2
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 1.8e-58 229.9 214 55.1
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 4.0e-58 228.8 214 55.1
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 3.7e-56 222.2 151 68.2
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 1.1e-52 210.7 207 51.7
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 3.2e-52 209.1 209 51.7
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 9.4e-52 207.6 152 63.8
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 2.6e-49 199.5 206 49.5
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 8.3e-48 194.5 124 77.4
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 1.6e-46 190.3 153 56.9
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 7.7e-46 188.0 209 46.4
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.3e-45 187.2 122 73.8
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 5.0e-45 185.3 206 47.1
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 7.3e-44 181.4 198 47.5
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 7.3e-44 181.4 196 48.0
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.1e-43 179.9 173 51.4
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 2.8e-43 179.5 175 50.3
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.4e-42 177.2 173 50.9
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 3.7e-40 169.1 175 48.6
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 1.2e-38 164.1 119 68.1
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 7.8e-38 161.4 119 68.9
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 7.3e-36 154.8 200 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 7.8e-30 134.8 160 46.2
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 2.3e-21 106.7 119 46.2
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 5.1e-21 105.5 154 40.9
MCO11G084 Micromonas commoda HOM05D003989 ORTHO05D004626 6.6e-21 105.1 221 31.7
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 2.1e-19 100.1 94 59.6
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 2.1e-19 100.1 94 59.6
Cre16.g694703 Chlamydomonas reinhardtii HOM05D003989 ORTHO05D004626 6.8e-18 95.1 172 32.6
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 5.8e-17 92.0 178 33.7
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 7.6e-17 91.7 92 53.3
Medtr1g069860 Medicago truncatula HOM05D003989 ORTHO05D004626 6.4e-16 88.6 65 66.2
C04p60570 Brassica napus HOM05D003989 ORTHO05D004626 9.2e-15 84.7 66 66.7
BcaC02g11217 Brassica carinata HOM05D003989 ORTHO05D004626 3.1e-10 69.7 46 63.0
BcaC02g11218 Brassica carinata HOM05D003989 ORTHO05D004626 3.1e-10 69.7 46 63.0
BolC4t23443H Brassica oleracea HOM05D003989 ORTHO05D004626 3.1e-10 69.7 46 63.0
C04p19080 Brassica napus HOM05D003989 ORTHO05D004626 1.5e-09 67.4 46 60.9
SMO117G0314 Selaginella moellendorffii HOM05D001774 ORTHO05D001663 4.2e-07 59.3 120 35.8
AL1G43820 Arabidopsis lyrata HOM05D001774 ORTHO05D001663 7.1e-07 58.5 144 29.9
Sp1g25820 Schrenkiella parvula HOM05D001774 ORTHO05D001663 9.3e-07 58.2 144 27.8
BolC4t27553H Brassica oleracea HOM05D003989 ORTHO05D004626 1.6e-06 57.4 39 64.1
Carub.0001s2819 Capsella rubella HOM05D001774 ORTHO05D001663 2.1e-06 57.0 144 29.2
Prupe.4G077300 Prunus persica HOM05D001774 ORTHO05D001663 2.1e-06 57.0 131 29.8
Aqoxy1G01767 Aquilegia oxysepala HOM05D001774 ORTHO05D001663 3.5e-06 56.2 134 28.4
BcaB05g24625 Brassica carinata HOM05D001774 ORTHO05D001663 6.0e-06 55.5 134 29.1


User provided reference genes

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