Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1144.11 Capsicum annuum HOM05D004610 ORTHO05D001148 3.3e-203 711.4 351 100.0
CAN.G1425.17 Capsicum annuum HOM05D003632 ORTHO05D001148 1.9e-121 439.9 359 68.8
CAN.G641.70 Capsicum annuum HOM05D004610 ORTHO05D001148 3.2e-105 386.0 366 62.6
CAN.G625.29 Capsicum annuum HOM05D004610 ORTHO05D001148 7.8e-104 381.3 637 42.5
CAN.G1144.13 Capsicum annuum HOM05D004610 ORTHO05D001148 9.6e-94 347.8 261 74.7
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 1.1e-76 291.2 244 66.4
PGSC0003DMG400026403 Solanum tuberosum HOM05D004610 ORTHO05D001148 1.9e-73 280.4 920 29.8
Sopen02g030820 Solanum pennellii HOM05D004610 ORTHO05D001148 6.1e-72 275.4 920 29.3
Solyc02g086130.4 Solanum lycopersicum HOM05D004610 ORTHO05D001148 1.1e-70 271.2 919 29.5
Peaxi162Scf00394g00714 Petunia axillaris HOM05D004610 ORTHO05D001148 2.3e-55 220.3 205 58.5
Nitab4.5_0000912g0100 Nicotiana tabacum HOM05D004610 ORTHO05D001148 6.7e-55 218.8 229 55.0
Nitab4.5_0004416g0030 Nicotiana tabacum HOM05D004610 ORTHO05D001148 2.2e-53 213.8 228 53.5
CAN.G1144.14 Capsicum annuum HOM05D004610 ORTHO05D001148 4.7e-40 169.5 99 84.8
CAN.G1357.22 Capsicum annuum HOM05D004610 ORTHO05D000242 2.2e-34 150.6 77 90.9
Dinv34812 Davidia involucrata HOM05D004610 ORTHO05D001133 1.7e-29 134.4 160 51.2
Dinv33954 Davidia involucrata HOM05D004610 ORTHO05D001148 6.3e-29 132.5 160 51.2
Hma1.2p1_1109F.1_g258110 Hydrangea macrophylla HOM05D004610 ORTHO05D001148 4.5e-27 126.3 161 47.8
SalBow5G2901 Salvia bowleyana HOM05D004610 ORTHO05D001148 1.0e-26 125.2 332 34.9
Actinidia36329 Actinidia chinensis HOM05D004610 ORTHO05D001148 1.7e-26 124.4 152 51.3
CAN.G222.97 Capsicum annuum HOM05D000357 ORTHO05D000242 1.7e-26 124.4 116 58.6
CAN.G30349.1 Capsicum annuum HOM05D004610 ORTHO05D001148 1.5e-25 121.3 68 83.8
QL02p051038 Quercus lobata HOM05D004610 ORTHO05D001148 9.5e-25 118.6 143 53.1
QL12p016556 Quercus lobata HOM05D004610 ORTHO05D001148 9.5e-25 118.6 143 53.1
Rhsim10G0068500 Rhododendron simsii HOM05D004610 ORTHO05D001148 9.5e-25 118.6 156 48.7
MSTRG.15301 Avicennia marina HOM05D004610 ORTHO05D001148 2.1e-24 117.5 146 50.7
GSVIVG01031010001 Vitis vinifera HOM05D004610 ORTHO05D001148 2.1e-24 117.5 179 46.9
CiPaw.03G062700 Carya illinoinensis HOM05D004610 ORTHO05D001148 5.2e-23 112.8 140 49.3
Lj4C191T3 Lonicera japonica HOM05D004610 ORTHO05D001148 5.2e-23 112.8 162 49.4
Haze_14166 Corylus avellana HOM05D004610 ORTHO05D001148 2.6e-22 110.5 147 47.6
Oeu050377.1 Olea europaea HOM05D004610 ORTHO05D001148 4.4e-22 109.8 162 45.1
Oeu016626.1 Olea europaea HOM05D004610 ORTHO05D001148 5.7e-22 109.4 152 47.4
MSTRG.3564 Avicennia marina HOM05D004610 ORTHO05D001148 1.7e-21 107.8 90 63.3
Manes.01G111200 Manihot esculenta HOM05D004610 ORTHO05D001148 2.2e-21 107.5 164 45.1
Dinv33955 Davidia involucrata HOM05D004610 ORTHO05D001148 3.7e-21 106.7 186 37.6
TAR629G1786 Trochodendron aralioides HOM05D004610 ORTHO05D001148 3.7e-21 106.7 170 45.9
Ciclev10010987m.g Citrus clementina HOM05D004610 ORTHO05D001148 4.9e-21 106.3 149 49.0
Cpa.g.sc170.58 Carica papaya HOM05D004610 ORTHO05D001148 6.4e-21 105.9 132 52.3
vmacro05540 Vaccinium macrocarpon HOM05D004610 ORTHO05D001148 1.1e-20 105.1 159 43.4
Migut.L00329 Erythranthe guttata HOM05D004610 ORTHO05D001148 2.4e-20 104.0 144 49.3
Nn4g23904 Nelumbo nucifera HOM05D004610 ORTHO05D001148 5.4e-20 102.8 169 43.2
Cc07_g08740 Coffea canephora HOM05D004610 ORTHO05D001148 7.0e-20 102.4 146 45.2
COL.COLO4_09347 Corchorus olitorius HOM05D004610 ORTHO05D001148 2.7e-19 100.5 169 46.7
Lsat_1_v5_gn_3_80440 Lactuca sativa HOM05D004610 ORTHO05D001148 3.5e-19 100.1 84 61.9
Aqoxy3G00248 Aquilegia oxysepala HOM05D004610 ORTHO05D001148 4.6e-19 99.8 161 45.3
Prupe.3G143500 Prunus persica HOM05D004610 ORTHO05D001148 1.0e-18 98.6 216 38.0
TAR622G0578 Trochodendron aralioides HOM05D004610 ORTHO05D001148 1.7e-18 97.8 122 52.5
CANSAT78G0943 Cannabis sativa HOM05D004610 ORTHO05D001148 2.3e-18 97.4 149 45.0
Duzib133G1423 Durio zibethinus HOM05D004610 ORTHO05D001148 2.3e-18 97.4 209 32.5
Atru.chr1.1663 Acer truncatum HOM05D004610 ORTHO05D001148 6.6e-18 95.9 144 47.9
MELO3C023734.2 Cucumis melo HOM05D004610 ORTHO05D001148 1.5e-17 94.7 154 42.9
Duzib138G0683 Durio zibethinus HOM05D004610 ORTHO05D001148 1.5e-17 94.7 135 51.1
Glyma.08G366600 Glycine max HOM05D004610 ORTHO05D001148 1.9e-17 94.4 161 41.0
Sabra04G0081200 Salix brachista HOM05D004610 ORTHO05D001148 3.3e-17 93.6 161 44.1
MD17G1245400 Malus domestica HOM05D004610 ORTHO05D001148 4.3e-17 93.2 228 36.4
Gohir.D11G170100 Gossypium hirsutum HOM05D004610 ORTHO05D001148 7.3e-17 92.4 121 50.4
VMungo1383G3338 Vigna mungo HOM05D004610 ORTHO05D001148 1.2e-16 91.7 161 43.5
CsaV3_3G020250 Cucumis sativus L. HOM05D004610 ORTHO05D001148 1.6e-16 91.3 154 41.6
Potri.004G098300 Populus trichocarpa HOM05D004610 ORTHO05D001148 2.8e-16 90.5 406 25.9
Thecc.04G132400 Theobroma cacao HOM05D004610 ORTHO05D001148 2.8e-16 90.5 135 48.1
Atru.chr7.2579 Acer truncatum HOM05D004610 ORTHO05D001148 3.6e-16 90.1 171 41.5
ECA246G0476 Erigeron canadensis HOM05D004610 ORTHO05D001148 3.6e-16 90.1 162 42.6
Gohir.A11G163800 Gossypium hirsutum HOM05D004610 ORTHO05D001148 4.7e-16 89.7 185 33.0
MBI09_g36995_MAGBIO Magnolia biondii HOM05D004610 ORTHO05D001148 4.7e-16 89.7 142 46.5
Gorai.007G181900 Gossypium raimondii HOM05D004610 ORTHO05D001148 6.2e-16 89.4 185 33.0
ClCG05G012340 Citrullus lanatus HOM05D004610 ORTHO05D001148 8.0e-16 89.0 259 32.4
Sabra17G0096000 Salix brachista HOM05D004610 ORTHO05D001148 1.0e-15 88.6 95 45.3
Potri.017G116000 Populus trichocarpa HOM05D004610 ORTHO05D001148 1.4e-15 88.2 209 37.3
Lj1g0023090 Lotus japonicus HOM05D004610 ORTHO05D001148 2.3e-15 87.4 182 37.9
Lalb_Chr17g0335941 Lupinus albus HOM05D004610 ORTHO05D001148 2.3e-15 87.4 182 37.9
TWI53G0037 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 3.1e-15 87.0 101 42.6
DCAR_021448 Daucus carota HOM05D004610 ORTHO05D001148 5.2e-15 86.3 109 40.4
Glyma.18G295800 Glycine max HOM05D004610 ORTHO05D001148 2.6e-14 84.0 161 41.6
Cfa007916 Carpinus fangiana HOM05D004610 ORTHO05D001148 5.8e-14 82.8 101 38.6
PGR004G0387 Punica granatum HOM05D004610 ORTHO05D001148 5.8e-14 82.8 92 56.5
TWI74G1419 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 5.8e-14 82.8 190 35.3
Ca_08077_v3 Cicer arietinum L. HOM05D004610 ORTHO05D001148 7.5e-14 82.4 105 51.4
HanXRQChr15g0470371 Helianthus annuus HOM05D004610 ORTHO05D001148 7.5e-14 82.4 118 47.5
Lalb_Chr04g0257511 Lupinus albus HOM05D004610 ORTHO05D001148 7.5e-14 82.4 159 38.4
Ca_04369_v3 Cicer arietinum L. HOM05D004610 ORTHO05D001148 1.7e-13 81.3 160 41.9
Eucgr.J01505 Eucalyptus grandis HOM05D004610 ORTHO05D001148 2.2e-13 80.9 135 43.7
Phvul.008G007100 Phaseolus vulgaris HOM05D004610 ORTHO05D001148 2.9e-13 80.5 161 39.8
CAN.G1357.26 Capsicum annuum HOM05D000357 ORTHO05D000242 3.7e-13 80.1 170 36.5
CiPaw.04G042900 Carya illinoinensis HOM05D004610 ORTHO05D001148 3.7e-13 80.1 112 39.3
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 4.9e-13 79.7 52 78.8
Lj2P441T41 Lonicera japonica HOM05D004610 ORTHO05D001148 4.9e-13 79.7 107 39.3
SGA_v2.0_scaffold115G32105 Striga asiatica HOM05D004610 ORTHO05D001148 6.4e-13 79.3 166 31.3
PGR042G0456 Punica granatum HOM05D004610 ORTHO05D001148 8.3e-13 79.0 150 38.0
Sed0002424 Sechium edule HOM05D004610 ORTHO05D001148 8.3e-13 79.0 227 26.4
Medtr7g082220 Medicago truncatula HOM05D004610 ORTHO05D001148 1.4e-12 78.2 99 37.4
Psat1g081040 Pisum sativum HOM05D004610 ORTHO05D001148 1.4e-12 78.2 85 60.0
Psat3g098280 Pisum sativum HOM05D004610 ORTHO05D001148 1.4e-12 78.2 180 36.7
CDE06G1633 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 2.4e-12 77.4 116 45.7
DCAR_017186 Daucus carota HOM05D004610 ORTHO05D001148 2.4e-12 77.4 101 38.6
TAR622G1165 Trochodendron aralioides HOM05D004610 ORTHO05D001148 2.4e-12 77.4 102 36.3
arahy.Tifrunner.gnm1.ann1.165KFU Arachis hypogaea HOM05D004610 ORTHO05D001148 3.2e-12 77.0 100 51.0
arahy.Tifrunner.gnm1.ann1.EX8XGT Arachis hypogaea HOM05D004610 ORTHO05D001148 3.2e-12 77.0 100 51.0
Hund13710 Selenicereus undatus HOM05D004610 ORTHO05D001148 3.2e-12 77.0 101 54.5
TWI77G0057 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 3.2e-12 77.0 105 36.2
Medtr4g008820 Medicago truncatula HOM05D004610 ORTHO05D001148 4.1e-12 76.6 157 40.8
RcHm_v2.0_Chr2g0126071 Rosa chinensis HOM05D004610 ORTHO05D001148 7.0e-12 75.9 123 30.1
CDE12G0399 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 9.2e-12 75.5 121 42.1
TPR.G31531 Trifolium pratense HOM05D004610 ORTHO05D001148 1.2e-11 75.1 182 37.4
A07p33780 Brassica napus HOM05D004610 ORTHO05D001148 2.0e-11 74.3 73 57.5
C06p43150 Brassica napus HOM05D004610 ORTHO05D001148 2.0e-11 74.3 73 57.5
BraA07t31004Z Brassica rapa HOM05D004610 ORTHO05D001148 2.7e-11 73.9 73 57.5
CARHR059440 Cardamine hirsuta HOM05D004610 ORTHO05D001148 2.7e-11 73.9 142 42.3
Medtr6g018770 Medicago truncatula HOM05D004610 ORTHO05D001148 2.7e-11 73.9 133 44.4
unitig_0.g840 Utricularia gibba HOM05D004610 ORTHO05D001148 2.7e-11 73.9 88 50.0
ATR1125G050 Amborella trichopoda HOM05D004610 ORTHO05D001148 3.5e-11 73.6 88 54.5
EL10Ac2g04555 Beta vulgaris HOM05D004610 ORTHO05D001148 3.5e-11 73.6 123 35.8
AUR62023294 Chenopodium quinoa HOM05D004610 ORTHO05D001148 6.0e-11 72.8 76 46.1
BcaNung06249 Brassica carinata HOM05D004610 ORTHO05D001148 1.0e-10 72.0 73 56.2
Lj2g0017794 Lotus japonicus HOM05D004610 ORTHO05D001148 1.0e-10 72.0 133 42.1
THA.LOC104805573 Tarenaya hassleriana HOM05D004610 ORTHO05D001148 1.0e-10 72.0 117 45.3
AT1G67040 Arabidopsis thaliana HOM05D004610 ORTHO05D001148 1.7e-10 71.2 162 35.8
BcaB05g24227 Brassica carinata HOM05D004610 ORTHO05D001148 1.7e-10 71.2 157 36.3
AL2G25380 Arabidopsis lyrata HOM05D004610 ORTHO05D001148 2.3e-10 70.9 146 39.7
AUR62009008 Chenopodium quinoa HOM05D004610 ORTHO05D001148 2.3e-10 70.9 76 44.7
HanXRQChr12g0375771 Helianthus annuus HOM05D004610 ORTHO05D001148 2.3e-10 70.9 113 36.3
MD09G1253600 Malus domestica HOM05D004610 ORTHO05D001148 2.3e-10 70.9 110 32.7
Sp5g21980 Schrenkiella parvula HOM05D004610 ORTHO05D001148 3.0e-10 70.5 163 38.7
Actinidia15889 Actinidia chinensis HOM05D004610 ORTHO05D001148 5.0e-10 69.7 79 44.3
Ah.16g101700 Amaranthus hybridus HOM05D004610 ORTHO05D001148 5.0e-10 69.7 143 42.7
Carub.0002s1333 Capsella rubella HOM05D004610 ORTHO05D001148 5.0e-10 69.7 143 39.9
Aa31LG2G3440 Aethionema arabicum HOM05D004610 ORTHO05D001148 6.6e-10 69.3 94 50.0
BolC6t39124H Brassica oleracea HOM05D004610 ORTHO05D001148 6.6e-10 69.3 73 54.8
A02p13870 Brassica napus HOM05D004610 ORTHO05D001148 1.1e-09 68.6 94 46.8
BraA02t06448Z Brassica rapa HOM05D004610 ORTHO05D001148 1.1e-09 68.6 94 46.8
Sc11g0008360 Simmondsia chinensis HOM05D004610 ORTHO05D001148 1.1e-09 68.6 160 39.4
SEGI_10040 Sequoiadendron giganteum HOM05D002110 ORTHO05D001148 1.5e-09 68.2 102 46.1
C02p22340 Brassica napus HOM05D004610 ORTHO05D001148 3.3e-09 67.0 73 52.1
BolC2t08387H Brassica oleracea HOM05D004610 ORTHO05D001148 3.3e-09 67.0 73 52.1
HPP92_021870 Vanilla planifolia HOM05D004610 ORTHO05D001148 3.3e-09 67.0 109 45.0
Thhalv10018132m.g Eutrema salsugineum HOM05D004610 ORTHO05D001148 7.3e-09 65.9 148 38.5
Lalb_Chr21g0317781 Lupinus albus HOM05D004610 ORTHO05D001148 7.3e-09 65.9 161 37.9
THA.LOC104822621 Tarenaya hassleriana HOM05D004610 ORTHO05D001148 9.5e-09 65.5 115 42.6
DCAR_025910 Daucus carota HOM05D004610 ORTHO05D001148 1.6e-08 64.7 101 36.6
BcaC03g14786 Brassica carinata HOM05D004610 ORTHO05D001148 2.8e-08 63.9 73 50.7
Lj2A441T53 Lonicera japonica HOM05D004610 ORTHO05D001148 2.6e-06 57.4 108 38.0
GSVIVG01033131001 Vitis vinifera HOM05D000109 ORTHO05D000210 2.6e-06 57.4 72 38.9
Ah.05g172560 Amaranthus hybridus HOM05D004610 ORTHO05D001148 5.8e-06 56.2 59 57.6


User provided reference genes

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