Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 0.0e+00 1973.0 1019 100.0
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1728.4 1019 86.8
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1728.0 1019 86.8
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 0.0e+00 1388.6 920 77.2
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 0.0e+00 1367.4 1003 72.1
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 0.0e+00 1263.8 1003 67.9
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1144.0 1039 57.9
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 1.5e-304 1049.7 1023 55.0
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.7e-300 1036.2 1038 52.5
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 2.9e-300 1035.4 1030 54.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 3.0e-297 1025.4 1043 52.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 7.4e-296 1020.8 1040 52.7
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 7.6e-293 1010.7 1026 54.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.6e-290 1003.0 1031 53.2
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 2.3e-289 999.2 1042 51.9
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 9.7e-288 993.8 1042 51.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 7.7e-285 984.2 1039 51.5
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 2.1e-282 976.1 1038 50.3
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.0e-281 973.8 1044 50.4
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 2.8e-279 965.7 1047 51.0
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 1.8e-278 963.0 1031 50.7
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 7.7e-277 957.6 1036 51.4
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 2.5e-275 952.6 1029 50.8
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 3.2e-275 952.2 1040 49.3
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 5.5e-275 951.4 1031 50.1
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 5.5e-275 951.4 1042 50.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 7.0e-270 934.5 1048 48.7
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 2.0e-269 932.9 1052 48.4
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 3.5e-269 932.2 1046 49.9
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.7e-266 922.5 1033 48.8
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 4.7e-266 921.8 1036 48.5
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 6.7e-265 917.9 1032 49.8
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 6.7e-265 917.9 1034 48.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 6.7e-265 917.9 1035 47.8
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 1.3e-263 913.7 1030 49.3
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 1.4e-262 910.2 1034 48.8
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.8e-262 909.8 1031 48.5
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 7.7e-261 904.4 1039 48.9
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.9e-259 899.8 1026 48.6
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 1.8e-257 893.3 1023 48.4
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 6.8e-257 891.3 1023 47.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 2.8e-255 885.9 1033 48.0
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 3.5e-253 879.0 1038 47.4
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 5.9e-253 878.2 1038 46.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.0e-252 877.5 1042 47.1
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 3.8e-252 875.5 1039 47.1
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 5.0e-252 875.2 1022 46.6
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.5e-251 873.6 1034 47.0
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.2e-251 872.1 1037 47.3
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.2e-250 870.5 1027 47.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 6.1e-250 868.2 978 49.4
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 8.0e-250 867.8 1034 46.4
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.6e-248 862.8 1034 46.2
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 1.5e-243 847.0 1018 46.4
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.3e-243 845.9 1034 45.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.3e-243 845.9 1021 45.9
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 6.1e-242 841.6 1024 45.9
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 5.2e-241 838.6 1026 44.7
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.0e-240 836.6 1016 46.2
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 9.8e-240 834.3 1031 45.2
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.2e-239 833.2 1009 45.9
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.1e-238 830.9 987 46.4
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.4e-238 830.5 1138 43.3
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.9e-238 830.1 891 49.7
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 7.0e-238 828.2 1072 44.8
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.6e-237 827.0 1030 45.1
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 2.0e-237 826.6 1040 45.6
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 8.6e-236 821.2 912 50.9
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.2e-233 812.0 1092 44.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.2e-229 800.8 1031 44.9
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.3e-228 797.3 1039 44.8
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 5.4e-222 775.4 950 46.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.7e-220 770.4 1037 41.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.8e-218 763.1 1037 41.3
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 2.8e-218 763.1 1027 42.6
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.7e-218 762.3 1028 41.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 8.9e-217 758.1 1028 41.6
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 8.9e-217 758.1 1032 41.5
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 8.9e-217 758.1 1028 41.6
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.8e-215 752.7 926 46.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 3.2e-214 749.6 1037 41.2
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 9.2e-214 748.0 1025 41.0
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.2e-213 747.7 1041 40.2
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.3e-212 744.2 1031 40.8
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.3e-212 744.2 1037 40.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.5e-208 730.7 1041 41.9
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 4.4e-208 729.2 1027 39.9
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.3e-207 727.6 1027 41.3
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.9e-204 716.1 951 44.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-200 704.5 949 43.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 4.8e-194 682.6 957 43.7
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 4.5e-192 676.0 1032 39.1
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.8e-188 664.1 1036 38.2
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.2e-178 630.6 835 43.2
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.5e-123 448.4 456 54.2
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.2e-122 444.5 952 33.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 9.8e-115 419.1 1068 30.5
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.3e-110 403.7 439 49.0
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.4e-105 386.7 526 40.9
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 3.8e-98 364.0 1070 27.4
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 3.8e-98 364.0 529 39.7
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 4.6e-96 357.1 514 40.7
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.3e-95 355.5 616 35.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.4e-92 345.5 312 57.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.2e-89 334.3 447 42.7
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.2e-89 334.3 433 44.6
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 8.1e-85 319.7 991 27.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.6e-56 225.7 191 60.2
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 2.8e-53 214.9 247 47.8
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.4e-52 211.8 1185 23.2
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-49 203.0 325 38.5
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.9e-47 194.5 180 55.6
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.0e-46 192.2 131 68.7
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-40 172.2 232 44.4
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.3e-37 162.9 184 48.9
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.8e-37 161.0 159 50.3
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.1e-36 158.3 111 66.7
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 5.7e-30 137.5 173 41.6
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 5.7e-30 137.5 132 51.5
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.6e-27 129.4 113 52.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.9e-25 122.5 179 44.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.5e-25 122.1 123 50.4
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 2.1e-24 119.0 273 31.5
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.1e-24 117.5 122 49.2
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.0e-23 115.2 121 53.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 4.0e-23 114.8 118 50.0
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.5e-22 112.8 162 38.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 7.0e-20 104.0 85 56.5
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.0e-19 102.4 127 42.5
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 6.6e-18 97.4 167 38.9
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 8.6e-18 97.1 76 52.6
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.0e-15 90.1 55 81.8
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 2.3e-15 89.0 231 29.9
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 2.2e-13 82.4 173 31.8
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 4.9e-13 81.3 90 44.4
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.2e-11 76.6 73 47.9
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 7.8e-11 73.9 60 58.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 7.8e-11 73.9 60 58.3
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.0e-10 73.6 117 41.9
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.3e-10 73.2 62 58.1
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.4e-07 63.2 106 37.7
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 6.8e-07 60.8 48 56.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.6e-06 58.9 49 57.1


User provided reference genes

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