Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.2e-55 218.8 117 100.0
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 7.5e-35 150.6 113 75.2
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.4e-33 146.4 116 69.0
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 2.0e-32 142.5 117 65.8
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.2e-27 126.7 98 68.4
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.6e-19 99.0 88 52.3
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.4e-19 98.6 85 55.3
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 6.4e-18 94.4 87 50.6
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 8.3e-18 94.0 87 50.6
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.1e-17 93.6 87 50.6
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 5.4e-17 91.3 108 49.1
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 5.4e-17 91.3 76 59.2
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 9.2e-17 90.5 82 56.1
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 1.2e-16 90.1 76 63.2
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 4.6e-16 88.2 81 50.6
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 7.8e-16 87.4 78 60.3
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 7.8e-16 87.4 79 57.0
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.7e-15 86.3 76 55.3
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.7e-15 86.3 79 58.2
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 3.0e-15 85.5 78 60.3
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 3.0e-15 85.5 79 55.7
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 3.9e-15 85.1 75 57.3
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 5.1e-15 84.7 81 51.9
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 1.5e-14 83.2 77 58.4
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.5e-14 83.2 78 51.3
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.5e-14 83.2 77 55.8
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 1.9e-14 82.8 77 54.5
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 1.9e-14 82.8 77 54.5
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 2.5e-14 82.4 86 53.5
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 2.5e-14 82.4 81 55.6
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 2.5e-14 82.4 90 52.2
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 3.3e-14 82.0 87 50.6
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.3e-14 82.0 78 57.7
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 3.3e-14 82.0 75 56.0
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 5.6e-14 81.3 76 56.6
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 5.6e-14 81.3 88 48.9
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 5.6e-14 81.3 77 57.1
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 7.3e-14 80.9 78 53.8
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 4.7e-13 78.2 86 50.0
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 6.2e-13 77.8 81 53.1
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 8.1e-13 77.4 76 52.6
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 8.1e-13 77.4 77 50.6
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 8.1e-13 77.4 79 51.9
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.1e-12 77.0 80 45.0
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 1.4e-12 76.6 76 52.6
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 1.4e-12 76.6 77 51.9
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 2.3e-12 75.9 79 49.4
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.1e-12 75.5 78 47.4
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 3.1e-12 75.5 78 47.4
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 5.2e-12 74.7 89 49.4
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 6.8e-12 74.3 94 41.5
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 8.9e-12 73.9 79 44.3
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.2e-11 73.6 88 46.6
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 1.5e-11 73.2 86 40.7
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 2.0e-11 72.8 78 47.4
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 2.6e-11 72.4 77 49.4
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 4.4e-11 71.6 76 50.0
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 5.8e-11 71.2 77 49.4
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 9.9e-11 70.5 84 46.4
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 9.9e-11 70.5 93 45.2
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 1.7e-10 69.7 80 46.2
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.7e-10 69.7 90 47.8
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.7e-10 69.7 77 49.4
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 2.2e-10 69.3 76 46.1
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 2.9e-10 68.9 80 46.2
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 4.9e-10 68.2 113 35.4
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 1.1e-09 67.0 81 48.1
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 5.4e-09 64.7 79 46.8
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 7.1e-09 64.3 85 43.5
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 7.1e-09 64.3 84 41.7
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 7.1e-09 64.3 82 42.7
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 7.1e-09 64.3 84 41.7
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 2.7e-08 62.4 113 32.7
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 2.7e-08 62.4 113 32.7
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 3.5e-08 62.0 85 42.4
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 3.5e-08 62.0 113 31.9
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 3.5e-08 62.0 113 31.9
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 3.5e-08 62.0 113 31.9
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 3.5e-08 62.0 92 38.0
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 3.5e-08 62.0 89 36.0
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 6.0e-08 61.2 82 41.5
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 6.0e-08 61.2 113 31.0
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 6.0e-08 61.2 82 41.5
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 1.0e-07 60.5 85 41.2
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 8.6e-07 57.4 85 41.2
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.5e-06 56.6 57 49.1


User provided reference genes

Program Settings