Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 2.3e-102 375.6 186 100.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.3e-94 349.7 186 91.9
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 8.7e-94 347.1 180 94.4
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 2.5e-93 345.5 180 93.9
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.8e-86 322.8 198 81.8
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 4.9e-81 304.7 173 84.4
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 8.7e-70 267.3 180 70.0
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 4.1e-67 258.5 149 85.9
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 3.4e-66 255.4 179 69.8
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 4.5e-66 255.0 179 69.8
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 1.4e-64 250.0 180 66.7
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.9e-64 249.6 177 67.8
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 4.6e-63 245.0 172 70.9
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 4.6e-63 245.0 186 63.4
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 3.0e-62 242.3 178 66.3
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 5.1e-62 241.5 181 67.4
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.1e-61 240.4 182 63.7
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 1.5e-61 240.0 175 68.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.5e-61 239.2 179 64.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.3e-61 238.4 177 64.4
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.7e-61 238.0 179 63.1
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.7e-61 238.0 178 65.2
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 7.4e-61 237.7 179 65.4
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.4e-61 237.7 177 65.0
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 9.7e-61 237.3 173 63.6
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 9.7e-61 237.3 177 66.7
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 9.7e-61 237.3 155 74.8
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.7e-60 236.5 180 63.3
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.8e-60 235.7 154 72.7
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 4.8e-60 235.0 150 74.0
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.8e-60 235.0 177 63.8
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 1.8e-59 233.0 173 66.5
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 4.1e-59 231.9 180 61.7
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 4.1e-59 231.9 180 61.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 2.0e-58 229.6 148 76.4
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.6e-58 229.2 174 66.1
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 3.4e-58 228.8 172 63.4
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 3.4e-58 228.8 173 64.2
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 7.7e-58 227.6 150 72.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.3e-57 226.9 174 65.5
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.3e-57 226.9 174 65.5
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-57 226.5 167 64.7
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.2e-57 226.1 214 56.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 2.9e-57 225.7 170 62.9
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 3.8e-57 225.3 167 64.1
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 3.8e-57 225.3 167 64.1
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 5.0e-57 224.9 165 64.8
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.9e-56 223.0 165 64.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 3.2e-56 222.2 165 64.8
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 3.2e-56 222.2 180 63.3
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 4.2e-56 221.9 183 61.7
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 7.2e-56 221.1 150 70.0
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 1.2e-55 220.3 178 61.2
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.2e-55 220.3 172 64.0
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.1e-55 219.5 165 64.8
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 2.1e-55 219.5 165 64.2
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 2.7e-55 219.2 179 61.5
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 4.7e-55 218.4 181 59.1
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 4.7e-55 218.4 172 61.6
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 6.1e-55 218.0 179 60.9
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 6.1e-55 218.0 172 64.5
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 7.9e-55 217.6 220 52.3
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.0e-54 217.2 183 58.5
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.4e-54 216.9 165 64.2
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 1.4e-54 216.9 179 60.9
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 2.3e-54 216.1 186 57.5
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 3.0e-54 215.7 180 62.8
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 3.9e-54 215.3 180 61.7
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 8.8e-54 214.2 180 59.4
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.0e-53 213.0 179 60.3
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 5.7e-53 211.5 158 66.5
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 9.7e-53 210.7 146 71.2
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 9.7e-53 210.7 180 59.4
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.3e-52 210.3 181 58.0
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 4.8e-52 208.4 128 75.8
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 6.3e-52 208.0 166 62.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 4.1e-51 205.3 182 57.7
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 9.1e-51 204.1 149 65.8
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.6e-50 202.6 180 57.8
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 3.5e-50 202.2 183 55.7
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 4.5e-50 201.8 134 69.4
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 2.5e-48 196.1 183 53.6
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 4.2e-48 195.3 175 56.0
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 4.2e-48 195.3 143 67.1
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.0e-46 190.7 173 56.6
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.4e-46 190.3 178 55.6
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 1.4e-46 190.3 148 57.4
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 4.1e-43 178.7 136 63.2
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 3.5e-42 175.6 152 57.9
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 2.9e-41 172.6 105 79.0
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.2e-40 169.1 131 63.4
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 5.5e-40 168.3 149 55.7
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.0e-38 162.5 173 53.8
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 3.3e-37 159.1 182 47.8
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 9.7e-37 157.5 223 44.4
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 9.7e-37 157.5 144 56.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.3e-35 151.8 186 44.1
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 7.0e-35 151.4 147 52.4
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 4.2e-32 142.1 101 63.4
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 8.8e-30 134.4 158 47.5
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.5e-29 133.7 153 45.8
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.1e-27 127.5 133 45.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 4.1e-27 125.6 108 56.5
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.3e-25 119.8 164 40.2
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 3.8e-25 119.0 129 47.3
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 4.4e-13 79.0 85 45.9
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.2e-12 76.6 146 37.7
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 4.1e-11 72.4 50 64.0
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 4.1e-11 72.4 63 58.7
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.6e-10 70.5 49 67.3
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 3.5e-10 69.3 88 48.9
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.7e-09 67.0 37 78.4
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 3.9e-09 65.9 143 28.0
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 4.7e-07 58.9 44 61.4
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 4.7e-07 58.9 61 47.5
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 4.7e-07 58.9 44 61.4
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 4.7e-07 58.9 61 47.5
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 1.4e-06 57.4 69 44.9
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.8e-06 57.0 44 59.1
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.8e-06 57.0 44 59.1
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 2.3e-06 56.6 61 47.5
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 4.0e-06 55.8 61 47.5
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 4.0e-06 55.8 61 47.5
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 6.8e-06 55.1 44 59.1
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 8.9e-06 54.7 69 46.4
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 8.9e-06 54.7 69 46.4


User provided reference genes

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