Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.0e-189 665.6 331 100.0
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 5.8e-157 557.8 305 86.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.5e-157 557.4 305 88.5
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.5e-154 548.5 305 87.2
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.7e-148 528.5 303 86.5
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.2e-140 502.7 305 81.3
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 5.8e-117 424.9 308 68.5
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.2e-116 422.9 308 67.9
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 2.2e-116 422.9 323 67.2
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.4e-116 421.0 306 68.0
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 7.9e-114 414.5 309 65.0
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.3e-113 412.9 308 65.6
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 6.7e-113 411.4 308 65.3
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-112 410.6 307 66.4
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.1e-112 410.6 309 65.7
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.5e-112 410.2 307 66.1
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.5e-112 409.5 308 64.0
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.4e-112 407.9 307 67.1
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.6e-111 406.8 307 67.1
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.8e-111 406.0 350 57.7
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.7e-111 405.6 314 65.6
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.7e-111 405.6 308 63.3
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.7e-111 405.6 308 63.6
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.1e-111 404.4 310 64.2
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.2e-109 400.6 304 65.8
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.0e-109 399.8 308 64.0
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 3.4e-109 399.1 308 65.9
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 4.5e-109 398.7 311 63.0
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.6e-109 397.9 309 65.7
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.7e-108 396.7 308 64.9
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 4.9e-108 395.2 308 62.0
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 8.4e-108 394.4 311 66.2
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.1e-107 394.0 309 61.8
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.1e-107 394.0 310 64.5
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.9e-107 393.3 309 63.1
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 4.2e-107 392.1 309 61.5
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.5e-107 391.7 308 63.0
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.2e-106 390.6 310 63.5
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.7e-106 389.4 308 63.0
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.7e-106 389.4 309 62.8
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.6e-106 388.7 308 63.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.6e-106 388.7 308 63.3
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 4.6e-106 388.7 306 61.8
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.0e-106 388.3 309 62.8
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.0e-105 387.5 306 66.3
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.3e-105 387.1 306 63.7
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.3e-105 387.1 311 62.7
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.8e-105 386.7 296 66.2
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 3.0e-105 386.0 307 61.9
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.7e-105 384.4 309 62.5
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.1e-104 384.0 304 63.2
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.1e-104 384.0 312 61.9
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.5e-104 383.6 287 63.8
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.5e-104 383.6 299 64.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.9e-104 383.3 364 55.2
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 2.5e-104 382.9 308 60.7
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 7.4e-104 381.3 308 59.7
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.3e-103 380.6 308 60.4
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 8.2e-103 377.9 322 60.2
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.4e-102 377.1 287 62.7
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.8e-102 376.7 310 62.9
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.0e-102 374.4 307 60.3
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.6e-101 372.9 308 59.1
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 7.6e-101 371.3 310 60.6
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.0e-100 370.9 377 53.1
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 5.0e-100 368.6 309 60.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.9e-99 366.7 308 61.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.9e-99 366.7 310 61.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 3.2e-99 365.9 308 61.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 3.2e-99 365.9 308 58.8
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.1e-98 363.2 309 59.2
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 6.1e-98 361.7 309 61.2
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.1e-98 361.7 300 59.7
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.0e-97 360.9 308 60.4
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.8e-97 360.1 314 58.3
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.3e-97 359.8 326 58.3
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.3e-97 359.8 268 67.5
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.0e-97 359.4 308 58.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 3.9e-97 359.0 308 59.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 7.4e-96 354.8 310 61.0
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 9.7e-96 354.4 308 56.8
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 9.7e-96 354.4 307 56.0
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.3e-95 354.0 310 61.0
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.8e-95 352.8 310 55.2
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 3.7e-95 352.4 267 62.5
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 4.8e-95 352.1 308 58.8
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.3e-95 351.7 310 59.4
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 6.3e-95 351.7 308 59.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.4e-94 350.5 298 59.1
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 9.0e-94 347.8 309 57.6
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.5e-93 347.1 308 58.1
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.6e-93 346.3 345 54.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.7e-92 343.6 349 52.7
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.4e-91 340.5 309 57.3
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.9e-91 340.1 318 55.7
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.5e-91 339.7 309 56.3
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 4.2e-91 339.0 309 57.3
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 4.2e-91 339.0 309 57.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.6e-90 337.0 318 55.3
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 3.0e-89 332.8 308 57.1
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.5e-88 330.5 334 52.1
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 4.3e-88 328.9 234 67.5
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.4e-88 328.2 272 62.1
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.7e-87 325.9 344 51.5
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 3.1e-86 322.8 353 50.4
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.9e-84 316.2 329 51.1
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.4e-83 313.9 270 59.6
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-82 310.1 306 56.2
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.1e-80 304.3 234 63.7
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 3.3e-80 302.8 221 65.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 3.7e-79 299.3 307 52.1
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 7.0e-78 295.0 278 54.0
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 5.9e-77 292.0 307 49.8
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 6.5e-76 288.5 314 48.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 7.2e-75 285.0 312 46.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.4e-72 275.8 289 53.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.0e-68 264.6 270 53.7
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.4e-65 254.2 195 62.1
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.2e-64 251.1 130 92.3
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.0e-64 250.4 307 46.9
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.4e-64 249.2 246 51.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.7e-64 248.8 274 51.1
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.2e-61 241.1 195 63.6
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.0e-60 235.7 315 46.3
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 4.2e-59 232.6 274 45.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 9.5e-59 231.5 234 48.3
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-58 231.1 156 69.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.3e-55 221.1 307 42.7
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.6e-53 214.2 164 64.0
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 7.7e-53 211.8 130 76.9
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 8.0e-50 201.8 117 79.5
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.9e-49 198.4 153 68.0
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.9e-47 192.6 171 57.9
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.6e-44 181.8 240 42.9
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.5e-43 181.0 153 59.5
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.2e-42 175.6 151 57.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.6e-37 161.0 286 37.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 7.8e-37 158.7 163 50.9
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 4.3e-35 152.9 127 59.8
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.3e-31 141.4 218 36.2
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.7e-31 141.0 215 33.5
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 4.1e-30 136.3 290 32.8
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.9e-28 129.8 104 62.5
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.1e-25 120.2 220 35.0
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 8.9e-25 118.6 94 64.9
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.2e-24 118.2 115 50.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.3e-23 114.8 120 54.2
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.4e-17 94.0 108 46.3
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.1e-17 93.6 66 65.2
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.4e-14 84.7 96 52.1
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 3.9e-12 76.6 59 69.5
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 6.6e-12 75.9 74 51.4
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.5e-11 74.7 74 51.4
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.5e-11 74.7 74 51.4
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.9e-11 74.3 73 53.4
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 4.0e-09 66.6 78 46.2
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 2.9e-07 60.5 46 63.0


User provided reference genes

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