Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 8.7e-199 696.8 362 100.0
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 5.3e-156 554.7 364 80.8
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 2.5e-153 545.8 364 79.7
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.2e-153 545.4 364 80.2
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.2e-131 473.8 367 70.0
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.0e-119 434.1 346 69.1
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.2e-115 420.6 344 68.0
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.6e-51 207.6 366 39.6
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-49 199.5 369 38.8
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-49 199.5 369 38.8
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.0e-41 174.1 400 35.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 2.2e-40 170.6 386 34.2
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.4e-39 167.2 379 35.1
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 4.1e-39 166.4 398 33.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 7.0e-39 165.6 389 33.9
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 4.5e-38 162.9 415 32.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.7e-35 153.7 376 32.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.1e-35 152.5 374 32.4
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.5e-33 147.9 453 30.0
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 2.0e-33 147.5 397 32.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 2.6e-33 147.1 386 31.9
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.6e-33 147.1 372 32.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 4.4e-33 146.4 404 30.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 7.5e-33 145.6 361 33.2
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.2e-32 144.1 203 44.8
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.2e-32 144.1 410 32.7
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 2.8e-32 143.7 374 32.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 8.2e-32 142.1 368 32.1
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.1e-31 141.7 375 32.0
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 5.3e-31 139.4 373 30.6
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 7.0e-31 139.0 170 44.1
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.0e-30 137.5 379 32.2
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.0e-30 137.5 384 32.3
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.0e-30 137.5 377 31.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.7e-30 137.1 164 43.3
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.7e-30 137.1 153 49.0
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.7e-30 135.6 362 31.8
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 7.7e-30 135.6 353 33.4
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.2e-29 134.0 162 43.2
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.9e-29 133.7 362 32.6
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.9e-29 133.7 362 32.6
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 3.8e-29 133.3 181 42.0
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.0e-29 132.9 381 30.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 6.5e-29 132.5 360 32.5
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.5e-29 132.5 361 29.9
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 6.5e-29 132.5 354 29.9
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.9e-28 131.0 187 41.2
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 3.2e-28 130.2 377 31.0
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 3.2e-28 130.2 372 32.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 5.5e-28 129.4 358 30.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 5.5e-28 129.4 357 34.2
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.5e-28 129.4 404 30.4
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 2.7e-27 127.1 357 31.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 2.7e-27 127.1 330 33.3
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 3.6e-27 126.7 364 31.0
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 6.1e-27 125.9 403 29.5
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.4e-26 124.8 389 31.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.8e-26 124.4 378 30.4
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.8e-26 124.4 190 40.5
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.8e-26 124.4 364 32.1
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.0e-26 123.6 423 29.1
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 5.2e-26 122.9 365 30.1
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 6.8e-26 122.5 383 31.3
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 6.8e-26 122.5 244 33.2
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 8.8e-26 122.1 370 30.8
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.2e-25 121.7 133 48.1
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 9.8e-25 118.6 366 28.7
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.8e-25 118.6 146 44.5
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.3e-24 118.2 365 30.1
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 2.8e-24 117.1 130 42.3
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 4.8e-24 116.3 178 40.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.3e-24 115.5 352 28.7
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.1e-23 115.2 345 31.9
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-23 115.2 375 29.6
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.4e-23 114.8 366 28.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.8e-23 114.4 143 39.9
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.4e-23 114.0 124 46.8
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.1e-23 113.6 392 30.4
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.1e-23 113.6 359 30.1
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 3.1e-23 113.6 144 44.4
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 3.1e-23 113.6 168 38.1
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 4.1e-23 113.2 129 43.4
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 4.1e-23 113.2 129 43.4
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 4.1e-23 113.2 383 30.8
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.4e-23 112.8 373 28.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 7.0e-23 112.5 129 43.4
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 7.0e-23 112.5 129 43.4
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 1.2e-22 111.7 360 28.9
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.6e-22 111.3 358 29.6
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.6e-22 111.3 182 37.4
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 2.0e-22 110.9 133 42.1
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.0e-22 110.9 139 41.0
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.0e-22 110.9 393 29.3
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 3.5e-22 110.2 373 28.7
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.5e-22 109.8 350 29.1
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.9e-22 109.4 373 28.7
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 5.9e-22 109.4 144 43.1
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.7e-22 109.0 364 26.9
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.3e-21 108.2 370 28.4
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.7e-21 107.8 360 26.9
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-21 107.8 356 28.7
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 3.8e-21 106.7 359 28.7
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 8.6e-21 105.5 360 27.5
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.5e-20 104.0 377 29.2
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.5e-20 104.0 377 29.2
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.5e-20 104.0 377 29.2
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-19 100.5 118 39.0
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.6e-19 100.1 397 27.5
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.3e-18 97.4 410 25.1
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 5.2e-18 96.3 334 29.9
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.0e-17 94.4 332 31.6
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.6e-17 94.0 364 25.8
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.6e-17 94.0 357 27.2
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 9.8e-17 92.0 200 31.5
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-16 91.7 110 38.2
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-16 91.7 110 38.2
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.2e-16 90.9 350 29.1
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.2e-16 90.9 119 41.2
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-16 90.5 199 30.2
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.1e-15 86.7 360 29.2
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 7.0e-15 85.9 283 29.3
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.0e-14 84.3 120 41.7
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 4.5e-14 83.2 269 29.4
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.9e-13 80.5 184 30.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 6.6e-13 79.3 376 28.2
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.5e-12 77.4 118 36.4
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 2.5e-12 77.4 108 40.7
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 3.3e-12 77.0 186 30.6
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 3.6e-11 73.6 163 30.1
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 8.0e-11 72.4 386 25.6
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.0e-09 67.8 165 29.7
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 3.7e-08 63.5 251 23.5
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.4e-07 61.6 305 28.5
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.4e-07 60.8 228 24.6
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 5.4e-07 59.7 290 26.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 7.0e-07 59.3 133 30.8
unitig_699.g19586 Utricularia gibba HOM05D033148 ORTHO05D006158 9.2e-07 58.9 76 46.1
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 1.6e-06 58.2 214 23.8
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.6e-06 58.2 166 28.9
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 7.8e-06 55.8 152 28.3


User provided reference genes

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